RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 RAP1GAPP47736 663 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 ZNF124Q15973 351 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 PLEKHG4Q58EX7 1191 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 ETV3LQ6ZN32 361 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 ARHGAP36Q6ZRI8 547 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 EP400NLQ6ZTU2 488 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 KIAA0907Q7Z7F0 614 aaPredicted RBP6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 OSTM1Q86WC4 334 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 TRIM48Q8IWZ4 208 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 RBM12BQ8IXT5 1001 aaKnown RBP6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 DHX37Q8IY37 1157 aaKnown RBP6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 NIM1KQ8IY84 436 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 IGSF22Q8N9C0 903 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 ARRDC4Q8NCT1 418 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 PANK1Q8TE04 598 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 SIGLEC10Q96LC7 697 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 MAGEC2Q9UBF1 373 aaPredicted RBP6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 ASH2LQ9UBL3 628 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 SMG5Q9UPR3 1016 aaKnown RBP6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 IRAK3Q9Y616 596 aa6.63□□□□□ -1.35
SMCHD1-204ENST00000581226 NPTXRO95502 500 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 C8AP07357 584 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 ATF2P15336 505 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 FLT3P36888 993 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 DALRD3Q5D0E6 543 aaKnown RBP6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 ABHD17CQ6PCB6 329 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 MIB1Q86YT6 1006 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 FAM126BQ8IXS8 530 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 CISD2Q8N5K1 135 aaKnown RBP6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 CLEC4DQ8WXI8 215 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 CPA5Q8WXQ8 436 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 DDX11Q96FC9 970 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 CELF4Q9BZC1 486 aaKnown RBP6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 INTS7Q9NVH2 962 aaKnown RBP6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 PLAAQ9Y263 795 aa6.62□□□□□ -1.35
SMCHD1-204ENST00000581226 TCRBV5S4A2TA0A5A2 114 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 IRS4O14654 1257 aaPredicted RBP6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 LTFP02788 710 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 GYS2P54840 703 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 JAM2P57087 298 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 FOXO4P98177 505 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 GRIN1Q05586 938 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 CACNB2Q08289 660 aaPredicted RBP6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 TUSC3Q13454 348 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 ZNF460Q14592 562 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 TAF7LQ5H9L4 462 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 ZCCHC8Q6NZY4 707 aaKnown RBP6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 CD300LDQ6UXZ3 194 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 DDX53Q86TM3 631 aaKnown RBP6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 PTRH1Q86Y79 214 aaKnown RBP6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 NLGN4XQ8N0W4 816 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 SH3RF2Q8TEC5 729 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 TOE1Q96GM8 510 aaKnown RBP6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 CD244Q9BZW8 370 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 SLKQ9H2G2 1235 aaPredicted RBP6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 CD320Q9NPF0 282 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 SAMD15Q9P1V8 674 aa6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 CNOT6Q9ULM6 557 aaKnown RBP6.61□□□□□ -1.35
SMCHD1-204ENST00000581226 AMY2AP04746 511 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 JMJD7P0C870 316 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 AMY2BP19961 511 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 IGFBP6P24592 240 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 STAT5AP42229 794 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 LIMS1P48059 325 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 LACTBP83111 547 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 TMEM177Q53S58 311 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 CNNM4Q6P4Q7 775 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 UBE2R2Q712K3 238 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 KCTD1Q719H9 257 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 OVCH1Q7RTY7 1134 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 B3GNT8Q7Z7M8 397 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 ZC3H18Q86VM9 953 aaKnown RBP6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 ANKLE2Q86XL3 938 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 FAM26EQ8N5C1 309 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 SMARCC2Q8TAQ2 1214 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 DTLQ9NZJ0 730 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 KCTD3Q9Y597 815 aa6.6□□□□□ -1.35
SMCHD1-204ENST00000581226 NPIPB6E9PJ23 425 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 ZNF561-AS1K7EIQ3 104 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 MAN2B1O00754 1011 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 KCNK3O14649 394 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 EPHA5P54756 1037 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 SSPNQ14714 243 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 KCNA10Q16322 511 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 CFAP100Q494V2 611 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 PIK3R6Q5UE93 754 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 LRRTM3Q86VH5 581 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 TMEFF1Q8IYR6 380 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 C2orf69Q8N8R5 385 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 MFSD3Q96ES6 412 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 SMURF1Q9HCE7 757 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 NGRNQ9NPE2 291 aaKnown RBP6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 SRPK3Q9UPE1 567 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 TELO2Q9Y4R8 837 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 ATP23Q9Y6H3 246 aa6.59□□□□□ -1.35
SMCHD1-204ENST00000581226 M0R2C6 588 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 RFXAPO00287 272 aa6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 GLRX3O76003 335 aaKnown RBP6.58□□□□□ -1.36
SMCHD1-204ENST00000581226 C8BP07358 591 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms