RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 GNA11P29992 359 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 SREBF1P36956 1147 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 SMAD3P84022 425 aaKnown RBP16.97■□□□□ 0.31
SS18-212ENST00000579061 MTMR1Q13613 665 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 PTGISQ16647 500 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 FAM109BQ6ICB4 259 aaPredicted RBP16.97■□□□□ 0.31
SS18-212ENST00000579061 GDF6Q6KF10 455 aaPredicted RBP16.97■□□□□ 0.31
SS18-212ENST00000579061 RPUSD2Q8IZ73 545 aaKnown RBP16.97■□□□□ 0.31
SS18-212ENST00000579061 CCDC155Q8N6L0 562 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 C7orf31Q8N865 590 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 CCDC148Q8NFR7 591 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 CAGE1Q8TC20 777 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 PHKBQ93100 1093 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 GPR20Q99678 358 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 MXRA8Q9BRK3 442 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 ALG1Q9BT22 464 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 NCOA5Q9HCD5 579 aaKnown RBP16.97■□□□□ 0.31
SS18-212ENST00000579061 NOD1Q9Y239 953 aa16.97■□□□□ 0.31
SS18-212ENST00000579061 H3BRB1 525 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 SORBS3O60504 671 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 PFKMP08237 780 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 CCL23P55773 120 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 CHMP4BP1P59074 171 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 RASIP1Q5U651 963 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 CPLX2Q6PUV4 134 aaKnown RBP16.96■□□□□ 0.31
SS18-212ENST00000579061 TRIM22Q8IYM9 498 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 BICD2Q8TD16 824 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 PPP1R13LQ8WUF5 828 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 SLC26A6Q9BXS9 759 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 TUT1Q9H6E5 874 aaKnown RBP16.96■□□□□ 0.31
SS18-212ENST00000579061 SH3GLB2Q9NR46 395 aa16.96■□□□□ 0.31
SS18-212ENST00000579061 SCN5AQ14524 2016 aa16.96■□□□□ 0.3
SS18-212ENST00000579061 CPLX1O14810 134 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 ATP9AO75110 1047 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 RFC2P35250 354 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 ARHGAP4P98171 946 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 SSRP1Q08945 709 aaKnown RBP16.95■□□□□ 0.3
SS18-212ENST00000579061 RBL2Q08999 1139 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 ANKRD1Q15327 319 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 CEP55Q53EZ4 464 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 ZNF365Q70YC5 407 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 NIPA1Q7RTP0 329 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 FAM177A1Q8N128 213 aaPredicted RBP16.95■□□□□ 0.3
SS18-212ENST00000579061 REXO1Q8N1G1 1221 aaKnown RBP16.95■□□□□ 0.3
SS18-212ENST00000579061 RETREG2Q8NC44 543 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 CRYGNQ8WXF5 182 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 HERVK_113Q902F9 699 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 CTAGE1Q96RT6 745 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 MTIF3Q9H2K0 278 aaKnown RBP16.95■□□□□ 0.3
SS18-212ENST00000579061 KCNH7Q9NS40 1196 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 TMEM260Q9NX78 707 aa16.95■□□□□ 0.3
SS18-212ENST00000579061 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.94■□□□□ 0.3
SS18-212ENST00000579061 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.94■□□□□ 0.3
SS18-212ENST00000579061 DEXIO95424 95 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 PARNO95453 639 aaKnown RBP16.94■□□□□ 0.3
SS18-212ENST00000579061 FGBP02675 491 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 CYP3A4P08684 503 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 ACRP10323 421 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 HOXC8P31273 242 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 PTK7Q13308 1070 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 JAKMIP3Q5VZ66 844 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 AFAP1L1Q8TED9 768 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 SEPT1Q8WYJ6 367 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 SCLYQ96I15 445 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 PGBD1Q96JS3 809 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 ZNF215Q9UL58 517 aaPredicted RBP16.94■□□□□ 0.3
SS18-212ENST00000579061 NFASCO94856 1347 aa16.94■□□□□ 0.3
SS18-212ENST00000579061 MEIS1O00470 390 aa16.93■□□□□ 0.3
SS18-212ENST00000579061 IQCF3P0C7M6 154 aa16.93■□□□□ 0.3
SS18-212ENST00000579061 DEFB123Q8N688 67 aa16.93■□□□□ 0.3
SS18-212ENST00000579061 VWCEQ96DN2 955 aa16.93■□□□□ 0.3
SS18-212ENST00000579061 LARP6Q9BRS8 491 aaKnown RBP16.93■□□□□ 0.3
SS18-212ENST00000579061 TET1Q8NFU7 2136 aa16.93■□□□□ 0.3
SS18-212ENST00000579061 PFKFB2O60825 505 aa16.92■□□□□ 0.3
SS18-212ENST00000579061 CDKL5O76039 1030 aa16.92■□□□□ 0.3
SS18-212ENST00000579061 TCF7P36402 384 aaPredicted RBP16.92■□□□□ 0.3
SS18-212ENST00000579061 ZNF76P36508 570 aa16.92■□□□□ 0.3
SS18-212ENST00000579061 STK3Q13188 491 aa16.92■□□□□ 0.3
SS18-212ENST00000579061 CYP2W1Q8TAV3 490 aa16.92■□□□□ 0.3
SS18-212ENST00000579061 DHX38Q92620 1227 aaKnown RBP16.92■□□□□ 0.3
SS18-212ENST00000579061 SLKQ9H2G2 1235 aaPredicted RBP16.92■□□□□ 0.3
SS18-212ENST00000579061 JPH1Q9HDC5 661 aaPredicted RBP16.92■□□□□ 0.3
SS18-212ENST00000579061 VPS54Q9P1Q0 977 aa16.92■□□□□ 0.3
SS18-212ENST00000579061 SLC9A2Q9UBY0 812 aa16.92■□□□□ 0.3
SS18-212ENST00000579061 TMEM265A0A087WTH1 108 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 GSTTP1A0A1W2PQM5 241 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 C17orf102A2RUQ5 167 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 PPFIA3O75145 1194 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 SMIM10L2AP0DMW4 78 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 SMIM10L2BP0DMW5 78 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 ARP10275 920 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 GNAT1P11488 350 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 SELPP16109 830 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 AK2P54819 239 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 SP4Q02446 784 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 SCRN1Q12765 414 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 TRIM71Q2Q1W2 868 aaKnown RBP16.91■□□□□ 0.3
SS18-212ENST00000579061 UTP14CQ5TAP6 766 aaKnown RBP16.91■□□□□ 0.3
SS18-212ENST00000579061 ZNF697Q5TEC3 545 aa16.91■□□□□ 0.3
SS18-212ENST00000579061 GALNT17Q6IS24 598 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms