RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 C7orf31Q8N865 590 aa22.22■■□□□ 1.15
SS18-209ENST00000578595 SLC43A3Q8NBI5 491 aa22.22■■□□□ 1.15
SS18-209ENST00000578595 TBX21Q9UL17 535 aa22.22■■□□□ 1.15
SS18-209ENST00000578595 TANC1Q9C0D5 1861 aa22.22■■□□□ 1.15
SS18-209ENST00000578595 SCN5AQ14524 2016 aa22.21■■□□□ 1.15
SS18-209ENST00000578595 ADAMTS3O15072 1205 aa22.21■■□□□ 1.15
SS18-209ENST00000578595 SUPT20HL2P0C7V6 817 aa22.21■■□□□ 1.15
SS18-209ENST00000578595 KIAA0753Q2KHM9 967 aa22.21■■□□□ 1.15
SS18-209ENST00000578595 CEP55Q53EZ4 464 aa22.21■■□□□ 1.15
SS18-209ENST00000578595 NFRKBQ6P4R8 1299 aa22.21■■□□□ 1.15
SS18-209ENST00000578595 SDF4Q9BRK5 362 aa22.21■■□□□ 1.15
SS18-209ENST00000578595 HIPK3Q9H422 1215 aa22.21■■□□□ 1.15
SS18-209ENST00000578595 ATP9AO75110 1047 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 PPFIA4O75335 1185 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 CD4P01730 458 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 KCNA2P16389 499 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 ITGB8P26012 769 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 FPGSQ05932 587 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 PLA2G4DQ86XP0 818 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 CYP2W1Q8TAV3 490 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 WASF1Q92558 559 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 KAT2BQ92831 832 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 SENP7Q9BQF6 1050 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 KCNH7Q9NS40 1196 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 PCDHA4Q9UN74 947 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 KCNJ14Q9UNX9 436 aa22.2■■□□□ 1.14
SS18-209ENST00000578595 WDR81Q562E7 1941 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 MAFGO15525 162 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 F2P00734 622 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 TIMP1P01033 207 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 LGALS2P05162 132 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 CYP2C9P11712 490 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 BMP8BP34820 402 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 RBM25P49756 843 aaKnown RBP22.19■■□□□ 1.14
SS18-209ENST00000578595 TDHQ8IZJ6 230 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 BLIDQ8IZY5 108 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 UIMC1Q96RL1 719 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 GPR20Q99678 358 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 LIMCH1Q9UPQ0 1083 aa22.19■■□□□ 1.14
SS18-209ENST00000578595 DDX39AO00148 427 aaKnown RBP22.18■■□□□ 1.14
SS18-209ENST00000578595 CTDNEP1O95476 244 aa22.18■■□□□ 1.14
SS18-209ENST00000578595 ARP10275 920 aa22.18■■□□□ 1.14
SS18-209ENST00000578595 CYP2C18P33260 490 aa22.18■■□□□ 1.14
SS18-209ENST00000578595 PTPN11Q06124 597 aaPredicted RBP22.18■■□□□ 1.14
SS18-209ENST00000578595 RABEP1Q15276 862 aa22.18■■□□□ 1.14
SS18-209ENST00000578595 TRIM50Q86XT4 487 aa22.18■■□□□ 1.14
SS18-209ENST00000578595 CCDC83Q8IWF9 413 aa22.18■■□□□ 1.14
SS18-209ENST00000578595 PRO3102Q9H379 93 aa22.18■■□□□ 1.14
SS18-209ENST00000578595 JPH1Q9HDC5 661 aaPredicted RBP22.18■■□□□ 1.14
SS18-209ENST00000578595 TCEAL9Q9UHQ7 104 aa22.18■■□□□ 1.14
SS18-209ENST00000578595 ZNF215Q9UL58 517 aaPredicted RBP22.18■■□□□ 1.14
SS18-209ENST00000578595 A0A1W2PPC1 479 aa22.17■■□□□ 1.14
SS18-209ENST00000578595 ST18O60284 1047 aa22.17■■□□□ 1.14
SS18-209ENST00000578595 TCF7P36402 384 aaPredicted RBP22.17■■□□□ 1.14
SS18-209ENST00000578595 PTGISQ16647 500 aa22.17■■□□□ 1.14
SS18-209ENST00000578595 TMEM199Q8N511 208 aa22.17■■□□□ 1.14
SS18-209ENST00000578595 HDAC6Q9UBN7 1215 aa22.17■■□□□ 1.14
SS18-209ENST00000578595 SLC9A2Q9UBY0 812 aa22.17■■□□□ 1.14
SS18-209ENST00000578595 TELO2Q9Y4R8 837 aa22.17■■□□□ 1.14
SS18-209ENST00000578595 UMODL1Q5DID0 1318 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 FAM86B1E9PN63 330 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 H3BRB1 525 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 JAK2O60674 1132 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 FAM86B2P0C5J1 330 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 HOXD8P13378 290 aaPredicted RBP22.16■■□□□ 1.14
SS18-209ENST00000578595 CCL23P55773 120 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 SETQ01105 290 aaPredicted RBP22.16■■□□□ 1.14
SS18-209ENST00000578595 TRIM29Q14134 588 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 PRR16Q569H4 304 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 GALNT17Q6IS24 598 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 GDF6Q6KF10 455 aaPredicted RBP22.16■■□□□ 1.14
SS18-209ENST00000578595 MFSD5Q6N075 450 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 NSUN7Q8NE18 718 aaKnown RBP22.16■■□□□ 1.14
SS18-209ENST00000578595 KIF2CQ99661 725 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 TUT1Q9H6E5 874 aaKnown RBP22.16■■□□□ 1.14
SS18-209ENST00000578595 AGO4Q9HCK5 861 aaKnown RBP22.16■■□□□ 1.14
SS18-209ENST00000578595 GJB4Q9NTQ9 266 aa22.16■■□□□ 1.14
SS18-209ENST00000578595 CYP3A4P08684 503 aa22.15■■□□□ 1.14
SS18-209ENST00000578595 PPIGQ13427 754 aaKnown RBP eCLIP22.15■■□□□ 1.14
SS18-209ENST00000578595 DAGLBQ8NCG7 672 aa22.15■■□□□ 1.14
SS18-209ENST00000578595 TBCKQ8TEA7 893 aa22.15■■□□□ 1.14
SS18-209ENST00000578595 SEPT1Q8WYJ6 367 aa22.15■■□□□ 1.14
SS18-209ENST00000578595 GLG1Q92896 1179 aa22.15■■□□□ 1.14
SS18-209ENST00000578595 ZNF577Q9BSK1 485 aa22.15■■□□□ 1.14
SS18-209ENST00000578595 C16orf70Q9BSU1 422 aa22.15■■□□□ 1.14
SS18-209ENST00000578595 NOC4LQ9BVI4 516 aaKnown RBP22.15■■□□□ 1.14
SS18-209ENST00000578595 BRMS1Q9HCU9 246 aa22.15■■□□□ 1.14
SS18-209ENST00000578595 CCDC194A0A1B0GVG4 234 aa22.14■■□□□ 1.13
SS18-209ENST00000578595 MEIS1O00470 390 aa22.14■■□□□ 1.13
SS18-209ENST00000578595 CSF2RAP15509 400 aa22.14■■□□□ 1.13
SS18-209ENST00000578595 MARK3P27448 753 aa22.14■■□□□ 1.13
SS18-209ENST00000578595 NONOQ15233 471 aaKnown RBP eCLIP22.14■■□□□ 1.13
SS18-209ENST00000578595 NIPA1Q7RTP0 329 aa22.14■■□□□ 1.13
SS18-209ENST00000578595 KRT25Q7Z3Z0 450 aa22.14■■□□□ 1.13
SS18-209ENST00000578595 FAM177A1Q8N128 213 aaPredicted RBP22.14■■□□□ 1.13
SS18-209ENST00000578595 CCDC155Q8N6L0 562 aa22.14■■□□□ 1.13
SS18-209ENST00000578595 RETREG2Q8NC44 543 aa22.14■■□□□ 1.13
SS18-209ENST00000578595 ZSCAN31Q96LW9 406 aaPredicted RBP22.14■■□□□ 1.13
SS18-209ENST00000578595 PHF20Q9BVI0 1012 aa22.14■■□□□ 1.13
SS18-209ENST00000578595 GTF2IRD1Q9UHL9 959 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms