RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	PAFAH1B1	P43034	410 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	RCAN1	P53805	252 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	KLHL30	Q0D2K2	578 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	MYOCD	Q8IZQ8	938 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	GOLGA5	Q8TBA6	731 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	BCAS4	Q8TDM0	211 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	ROBO1	Q9Y6N7	1651 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	USP8	P40818	1118 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	RASSF4	Q9H2L5	321 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	LDHC	P07864	332 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	CTTN	Q14247	550 aa	Known RBP	16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	SRL	Q86TD4	932 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	HAS1	Q92839	578 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	GBP3	Q9H0R5	595 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	SH2D4A	Q9H788	454 aa		16.34	■□□□□ 0.21
PRPF8-216	ENST00000577001	SPATA31A5	Q5VU36	1347 aa		16.33	■□□□□ 0.21
PRPF8-216	ENST00000577001	SPATA31A7	Q8IWB4	1347 aa		16.33	■□□□□ 0.21
PRPF8-216	ENST00000577001	SHANK3	Q9BYB0	1731 aa		16.33	■□□□□ 0.21
PRPF8-216	ENST00000577001	EIF3CL	B5ME19	914 aa	Known RBP	16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	RHBDL3	P58872	404 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	CERS5	Q8N5B7	392 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	FAM76A	Q8TAV0	307 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	RAD54L	Q92698	747 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	EIF3C	Q99613	913 aa	Known RBP	16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	TLR10	Q9BXR5	811 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	POTEB2	H3BUK9	544 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	MED24	O75448	989 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	MYB	P10242	640 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	ARHGAP44	Q17R89	818 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	NEDD1	Q8NHV4	660 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	FAM71B	Q8TC56	605 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	MTMR4	Q9NYA4	1195 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	SIK3	Q9Y2K2	1263 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	CACNA1S	Q13698	1873 aa		16.33	■□□□□ 0.2
PRPF8-216	ENST00000577001	BCL9L	Q86UU0	1499 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	NID2	Q14112	1375 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	NR2F2	P24468	414 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	ZNF76	P36508	570 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	KCNB1	Q14721	858 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	CELF4	Q9BZC1	486 aa	Known RBP	16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	DDX47	Q9H0S4	455 aa	Known RBP	16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	CWC15	Q9P013	229 aa	Known RBP	16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	PLA2G4B	P0C869	781 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	ZNF211	Q13398	564 aa	Predicted RBP	16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	COG2	Q14746	738 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	SEPT2	Q15019	361 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	MAN2A1	Q16706	1144 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	SFMBT2	Q5VUG0	894 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	P2RX7	Q99572	595 aa	Known RBP	16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	TSG101	Q99816	390 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	C7orf25	Q9BPX7	421 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	PAPD7	Q5XG87	772 aa	Known RBP	16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	CCDC70	Q6NSX1	233 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	CCDC174	Q6PII3	467 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	FAM114A1	Q8IWE2	563 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	ALS2CR12	Q96Q35	445 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	MTA3	Q9BTC8	594 aa		16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	PPAN	Q9NQ55	473 aa	Known RBP	16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	AJAP1	Q9UKB5	411 aa	Predicted RBP	16.32	■□□□□ 0.2
PRPF8-216	ENST00000577001	DISP2	A7MBM2	1401 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	SFR1	Q86XK3	245 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	TBC1D16	Q8TBP0	767 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	LRRC4C	Q9HCJ2	640 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001		A0A1W2PQC6	194 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	ATP8B1	O43520	1251 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	CALCA	P01258	141 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	ITGA4	P13612	1032 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	GSTO1	P78417	241 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	QRICH1	Q2TAL8	776 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	RNF187	Q5TA31	235 aa	Predicted RBP	16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	KLHDC7A	Q5VTJ3	777 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	FBXW10	Q5XX13	1052 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	HAUS3	Q68CZ6	603 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	AADACL2	Q6P093	401 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	UNC13D	Q70J99	1090 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	ZIM3	Q96PE6	472 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	BHMT2	Q9H2M3	363 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	ACBD3	Q9H3P7	528 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	ACP6	Q9NPH0	428 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	PLAGL2	Q9UPG8	496 aa		16.31	■□□□□ 0.2
PRPF8-216	ENST00000577001	GFPT2	O94808	682 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	GCNT3	O95395	438 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	CYP2J2	P51589	502 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	CKAP4	Q07065	602 aa	Known RBP	16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	CENPP	Q6IPU0	288 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	C16orf86	Q6ZW13	317 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	TPH2	Q8IWU9	490 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	ZC3H12C	Q9C0D7	883 aa	Known RBP	16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	THRAP3	Q9Y2W1	955 aa	Known RBP	16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	CFB	P00751	764 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	TRIM49	P0CI25	452 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	TRIM49C	P0CI26	452 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	DHX9	Q08211	1270 aa	Known RBP	16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	KCNH2	Q12809	1159 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	HNRNPLL	Q8WVV9	542 aa	Known RBP	16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	BAP1	Q92560	729 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	EMILIN3	Q9NT22	766 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	COL4A3BP	Q9Y5P4	624 aa		16.3	■□□□□ 0.2
PRPF8-216	ENST00000577001	TISP43	B9A030	160 aa		16.3	■□□□□ 0.2

Retrieved 100 of 20,778 RNA–protein pairs in 30 ms