RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FRMPD2Q68DX3 1309 aaPredicted RBP7.11□□□□□ -1.27
VPS53-219ENST00000576019 WDR17Q8IZU2 1322 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 H3BRJ5 948 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 NOP56O00567 594 aaKnown RBP7.11□□□□□ -1.27
VPS53-219ENST00000576019 CLEC3AO75596 197 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 CTSBP07858 339 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 MAOBP27338 520 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 YARSP54577 528 aaKnown RBP7.11□□□□□ -1.27
VPS53-219ENST00000576019 SCARF1Q14162 830 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 GALEQ14376 348 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 GBX1Q14549 363 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 POU4F3Q15319 338 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 SAFBQ15424 915 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS53-219ENST00000576019 NTRK3Q16288 839 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 PCSK7Q16549 785 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 ZCCHC8Q6NZY4 707 aaKnown RBP7.11□□□□□ -1.27
VPS53-219ENST00000576019 KRBA2Q6ZNG9 492 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 ALYREFQ86V81 257 aaKnown RBP7.11□□□□□ -1.27
VPS53-219ENST00000576019 AMIGO3Q86WK7 504 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 CNTROBQ8N137 903 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 CPA6Q8N4T0 437 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 PTPRN2Q92932 1015 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 MRGPRX3Q96LB0 322 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 DPH2Q9BQC3 489 aaPredicted RBP7.11□□□□□ -1.27
VPS53-219ENST00000576019 MENTQ9BUN1 341 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 DDX21Q9NR30 783 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS53-219ENST00000576019 SAMD15Q9P1V8 674 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 TJP2Q9UDY2 1190 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 SAP30BPQ9UHR5 308 aaKnown RBP7.11□□□□□ -1.27
VPS53-219ENST00000576019 ANAPC4Q9UJX5 808 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 RCAN3Q9UKA8 241 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 PNMA8BQ9ULN7 279 aaPredicted RBP7.11□□□□□ -1.27
VPS53-219ENST00000576019 ANKRD6Q9Y2G4 727 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 KAT6BQ8WYB5 2073 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 UBR3Q6ZT12 1888 aa7.11□□□□□ -1.27
VPS53-219ENST00000576019 MYOM3Q5VTT5 1437 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 ABCC11Q96J66 1382 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 ANO9A1A5B4 782 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 FZD9O00144 591 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 RGS13O14921 159 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 FKBP9O95302 570 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 CRTAMO95727 393 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 MMP10P09238 476 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 ERVK-21P61565 698 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 SETQ01105 290 aaPredicted RBP7.1□□□□□ -1.27
VPS53-219ENST00000576019 ELMSAN1Q6PJG2 1045 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 TXNDC11Q6PKC3 985 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 FKBP9P1Q75LS8 142 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 HDGFL2Q7Z4V5 671 aaPredicted RBP7.1□□□□□ -1.27
VPS53-219ENST00000576019 PNMA8AQ86V59 439 aaPredicted RBP7.1□□□□□ -1.27
VPS53-219ENST00000576019 AMOTL1Q8IY63 956 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 SLFN12Q8IYM2 578 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 DEFB123Q8N688 67 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 SMARCC1Q92922 1105 aaPredicted RBP7.1□□□□□ -1.27
VPS53-219ENST00000576019 BRF1Q92994 677 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 LUZP4Q9P127 313 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 ZNF451Q9Y4E5 1061 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 PCDHA9Q9Y5H5 950 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 TAF1LQ8IZX4 1826 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 PPLO60437 1756 aa7.1□□□□□ -1.27
VPS53-219ENST00000576019 NSD2O96028 1365 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 A0A1W2PPC1 479 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 SPDYE3A6NKU9 549 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 B4E1Z4 1266 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 PMM2O15305 246 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 NBNO60934 754 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 PPM1BO75688 479 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 GLRX3O76003 335 aaKnown RBP7.09□□□□□ -1.27
VPS53-219ENST00000576019 CYP11A1P05108 521 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 ASGR2P07307 311 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 MYL3P08590 195 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 LPOP22079 712 aaPredicted RBP7.09□□□□□ -1.27
VPS53-219ENST00000576019 GBP1P32455 592 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 CYP2C19P33261 490 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 RECQLP46063 649 aaPredicted RBP7.09□□□□□ -1.27
VPS53-219ENST00000576019 KCNJ6P48051 423 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 ATP13A4Q4VNC1 1196 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 ABHD17CQ6PCB6 329 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 PCGF5Q86SE9 256 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 SYT9Q86SS6 491 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 TRIM59Q8IWR1 403 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 CPXCR1Q8N123 301 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 BAHD1Q8TBE0 780 aaPredicted RBP7.09□□□□□ -1.27
VPS53-219ENST00000576019 TMEM87BQ96K49 555 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 SLC13A1Q9BZW2 595 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 NRSN2Q9GZP1 204 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 WNT10AQ9GZT5 417 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 ZHX3Q9H4I2 956 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 TCF7L1Q9HCS4 588 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 PLCB1Q9NQ66 1216 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 PICK1Q9NRD5 415 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 PHTF1Q9UMS5 762 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 SLC6A14Q9UN76 642 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 AKT3Q9Y243 479 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 HIF3AQ9Y2N7 669 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 GIT1Q9Y2X7 761 aa7.09□□□□□ -1.27
VPS53-219ENST00000576019 DICER1Q9UPY3 1922 aaKnown RBP7.09□□□□□ -1.27
VPS53-219ENST00000576019 PPIP5K1Q6PFW1 1433 aa7.09□□□□□ -1.28
VPS53-219ENST00000576019 CHD8Q9HCK8 2581 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 ERC2O15083 957 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms