RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 ATP9AO75110 1047 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 HSP90AA1P07900 732 aaKnown RBP10.85□□□□□ -0.67
CCDC40-214ENST00000575431 ARP10275 920 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 HOXD8P13378 290 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-214ENST00000575431 TRAPPC10P48553 1259 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 PURAQ00577 322 aaKnown RBP10.85□□□□□ -0.67
CCDC40-214ENST00000575431 NR5A1Q13285 461 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 ORC2Q13416 577 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-214ENST00000575431 SNX17Q15036 470 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 INF2Q27J81 1249 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 HSDL1Q3SXM5 330 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 PRR16Q569H4 304 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 LARP1BQ659C4 914 aaKnown RBP10.85□□□□□ -0.67
CCDC40-214ENST00000575431 CXCL17Q6UXB2 119 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 SLC39A5Q6ZMH5 540 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 CYFIP1Q7L576 1253 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 CYP2W1Q8TAV3 490 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 OXER1Q8TDS5 423 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 TNFRSF25Q93038 417 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 VTI1AQ96AJ9 217 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 MBOAT7Q96N66 472 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 RIT2Q99578 217 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 ZNF577Q9BSK1 485 aa10.85□□□□□ -0.67
CCDC40-214ENST00000575431 AGO4Q9HCK5 861 aaKnown RBP10.85□□□□□ -0.67
CCDC40-214ENST00000575431 JPH1Q9HDC5 661 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-214ENST00000575431 A0A0U1RQG5 324 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-214ENST00000575431 IPO5O00410 1097 aaKnown RBP10.84□□□□□ -0.67
CCDC40-214ENST00000575431 TBX3O15119 743 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 MYL3P08590 195 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 U2AF2P26368 475 aaKnown RBP eCLIP10.84□□□□□ -0.67
CCDC40-214ENST00000575431 GUCY1B3Q02153 619 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 PTPN11Q06124 597 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-214ENST00000575431 LETM2Q2VYF4 491 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 SEPT1Q8WYJ6 367 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 TNPO1Q92973 898 aaKnown RBP10.84□□□□□ -0.67
CCDC40-214ENST00000575431 FERMT2Q96AC1 680 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 FAM20AQ96MK3 541 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 TOX2Q96NM4 488 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 GPR20Q99678 358 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 SLC9A2Q9UBY0 812 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 DDX25Q9UHL0 483 aaKnown RBP10.84□□□□□ -0.67
CCDC40-214ENST00000575431 ZNF215Q9UL58 517 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-214ENST00000575431 NOL7Q9UMY1 257 aaKnown RBP10.84□□□□□ -0.67
CCDC40-214ENST00000575431 NR2E3Q9Y5X4 410 aa10.84□□□□□ -0.67
CCDC40-214ENST00000575431 ARVCFO00192 962 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 EVI5O60447 810 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 CCNT1O60563 726 aaKnown RBP10.83□□□□□ -0.68
CCDC40-214ENST00000575431 BAG4O95429 457 aaKnown RBP10.83□□□□□ -0.68
CCDC40-214ENST00000575431 F2P00734 622 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 FOSBP53539 338 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 IRX5P78411 483 aaPredicted RBP10.83□□□□□ -0.68
CCDC40-214ENST00000575431 KRT76Q01546 638 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 ITGA7Q13683 1181 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 BECN1Q14457 450 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 ZNF746Q6NUN9 644 aaPredicted RBP10.83□□□□□ -0.68
CCDC40-214ENST00000575431 NOSTRINQ8IVI9 506 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 SMAP1Q8IYB5 467 aaPredicted RBP10.83□□□□□ -0.68
CCDC40-214ENST00000575431 DPF3Q92784 378 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 SLC5A5Q92911 643 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 LENG9Q96B70 501 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 TEKT3Q9BXF9 490 aa10.83□□□□□ -0.68
CCDC40-214ENST00000575431 DCDC2CA8MYV0 355 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 TLR3O15455 904 aaKnown RBP10.82□□□□□ -0.68
CCDC40-214ENST00000575431 MSH4O15457 936 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 DHX15O43143 795 aaKnown RBP10.82□□□□□ -0.68
CCDC40-214ENST00000575431 EDIL3O43854 480 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 MARCH6O60337 910 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 ATG7O95352 703 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 TDP2O95551 362 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 SUPT20HL2P0C7V6 817 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 PTGS1P23219 599 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 SFNP31947 248 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 TCF7P36402 384 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-214ENST00000575431 SLC26A2P50443 739 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 CDK7P50613 346 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 ATN1P54259 1190 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-214ENST00000575431 ITGB3BPQ13352 177 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-214ENST00000575431 RILPL1Q5EBL4 403 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 NFRKBQ6P4R8 1299 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 ANKRD33Q7Z3H0 272 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 SLFN12Q8IYM2 578 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 SLC43A3Q8NBI5 491 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 RDM1Q8NG50 284 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 SMARCAD1Q9H4L7 1026 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 AZI2Q9H6S1 392 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 PKD2L1Q9P0L9 805 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 EMSYQ7Z589 1322 aa10.82□□□□□ -0.68
CCDC40-214ENST00000575431 GSTTP1A0A1W2PQM5 241 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 H3BRB1 525 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 HAS3O00219 553 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 GAS7O60861 476 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 LGALS2P05162 132 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 JAK3P52333 1124 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 RTP1P59025 263 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 ACTR2P61160 394 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 LRRC26Q2I0M4 334 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 EARS2Q5JPH6 523 aaKnown RBP10.81□□□□□ -0.68
CCDC40-214ENST00000575431 LRCH2Q5VUJ6 765 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 MCTP1Q6DN14 999 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 MIS18BP1Q6P0N0 1132 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms