RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 IMPDH2P12268 514 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 LPOP22079 712 aaPredicted RBP7.95□□□□□ -1.14
VPS53-217ENST00000575100 LBX1P52954 281 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 TMPRSS15P98073 1019 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 MAP2K1Q02750 393 aaPredicted RBP7.95□□□□□ -1.14
VPS53-217ENST00000575100 GTF2H3Q13889 308 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 MAP1SQ66K74 1059 aaPredicted RBP7.95□□□□□ -1.14
VPS53-217ENST00000575100 AGMOQ6ZNB7 445 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 TRIM42Q8IWZ5 723 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 TRMT44Q8IYL2 757 aaKnown RBP7.95□□□□□ -1.14
VPS53-217ENST00000575100 TRIM22Q8IYM9 498 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 RHPN1Q8TCX5 695 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS53-217ENST00000575100 FOXJ1Q92949 421 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 LRRCC1Q9C099 1032 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 SH3GLB2Q9NR46 395 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 HDAC5Q9UQL6 1122 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 TAF1P21675 1872 aa7.95□□□□□ -1.14
VPS53-217ENST00000575100 LRRC37AA6NMS7 1700 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 MYH3P11055 1940 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 A0A1W2PQH9 124 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 SERTM1A2A2V5 107 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 F5H423 210 aaPredicted RBP7.94□□□□□ -1.14
VPS53-217ENST00000575100 ERVH48-1M5A8F1 160 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 F13A1P00488 732 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 PF4V1P10720 104 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 ALDH5A1P51649 535 aaPredicted RBP7.94□□□□□ -1.14
VPS53-217ENST00000575100 AK2P54819 239 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 RAB15P59190 212 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 PTPN21Q16825 1174 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 CCDC57Q2TAC2 916 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 SLC10A6Q3KNW5 377 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 PDE12Q6L8Q7 609 aaKnown RBP7.94□□□□□ -1.14
VPS53-217ENST00000575100 GPR153Q6NV75 609 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 USP50Q70EL3 339 aaPredicted RBP7.94□□□□□ -1.14
VPS53-217ENST00000575100 AHI1Q8N157 1196 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 BAP1Q92560 729 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 CDHR1Q96JP9 859 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 CENPOQ9BU64 300 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 NAA15Q9BXJ9 866 aaKnown RBP7.94□□□□□ -1.14
VPS53-217ENST00000575100 VPS33BQ9H267 617 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 ANKRD6Q9Y2G4 727 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 SH3BP1Q9Y3L3 701 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 SALL3Q9BXA9 1300 aa7.94□□□□□ -1.14
VPS53-217ENST00000575100 WTIPA6NIX2 430 aaPredicted RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 K7ENM7 598 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 TFCP2Q12800 502 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 IFIT5Q13325 482 aaKnown RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 LAMC2Q13753 1193 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 MAP7Q14244 749 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 SEPT2Q15019 361 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 PCBP1Q15365 356 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS53-217ENST00000575100 SF3B3Q15393 1217 aaKnown RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 SEPT7Q16181 437 aaKnown RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 FCHSD1Q86WN1 690 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 NDUFAF2Q8N183 169 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 CBARPQ8N350 705 aaPredicted RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 ZDHHC1Q8WTX9 485 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 CELF1Q92879 486 aaKnown RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 RBM17Q96I25 401 aaKnown RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 PPM1MQ96MI6 270 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 MYCBPQ99417 103 aaPredicted RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 TLR7Q9NYK1 1049 aaKnown RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 A0A1B0GVC2 190 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 SNAP23O00161 211 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 EYA2O00167 538 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 CDK2AP1O14519 115 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 PPEF1O14829 653 aaPredicted RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 ASGR2P07307 311 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 CELA3AP09093 270 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 ADCY1Q08828 1119 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 SLC9A5Q14940 896 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 ARHGAP29Q52LW3 1261 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 BNC2Q6ZN30 1099 aaPredicted RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 ZNF438Q7Z4V0 828 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 CPA6Q8N4T0 437 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 FAM160A2Q8N612 972 aaPredicted RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 NAXEQ8NCW5 288 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 RPGRQ92834 1020 aaKnown RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 EAF2Q96CJ1 260 aaPredicted RBP7.93□□□□□ -1.14
VPS53-217ENST00000575100 KIF1BPQ96EK5 621 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 ABHD8Q96I13 439 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 SLC13A1Q9BZW2 595 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 CHRDQ9H2X0 955 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 FNIP2Q9P278 1114 aa7.93□□□□□ -1.14
VPS53-217ENST00000575100 ANKRD18BA2A2Z9 1011 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 FAM221AA4D161 298 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 DNAJC8O75937 253 aaPredicted RBP7.92□□□□□ -1.14
VPS53-217ENST00000575100 ATICP31939 592 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 CYP2C19P33261 490 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 EPS15P42566 896 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 CLCQ05315 142 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 G3BP1Q13283 466 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS53-217ENST00000575100 AGERQ15109 404 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 TEAD4Q15561 434 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 ABCB5Q2M3G0 1257 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 CCDC152Q4G0S7 254 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 ATP13A4Q4VNC1 1196 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 RUFY4Q6ZNE9 571 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 GATAD2BQ8WXI9 593 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms