RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 IGDCC4Q8TDY8 1250 aa24.37■■□□□ 1.49
VPS53-216ENST00000574029 GDPD5Q8WTR4 605 aa24.37■■□□□ 1.49
VPS53-216ENST00000574029 INPP4AQ96PE3 977 aaPredicted RBP24.37■■□□□ 1.49
VPS53-216ENST00000574029 TGS1Q96RS0 853 aaKnown RBP24.37■■□□□ 1.49
VPS53-216ENST00000574029 SUGCTQ9HAC7 445 aa24.37■■□□□ 1.49
VPS53-216ENST00000574029 DOCK5Q9H7D0 1870 aa24.36■■□□□ 1.49
VPS53-216ENST00000574029 SPATA31C2B4DYI2 1134 aa24.36■■□□□ 1.49
VPS53-216ENST00000574029 SGSM2O43147 1006 aa24.36■■□□□ 1.49
VPS53-216ENST00000574029 LGALS2P05162 132 aa24.36■■□□□ 1.49
VPS53-216ENST00000574029 ANTXR2P58335 489 aa24.36■■□□□ 1.49
VPS53-216ENST00000574029 LIN28BQ6ZN17 250 aaKnown RBP eCLIP24.36■■□□□ 1.498e-8■■■■■ 29.1
VPS53-216ENST00000574029 CATIPQ7Z7H3 387 aa24.36■■□□□ 1.49
VPS53-216ENST00000574029 DBF4BQ8NFT6 615 aa24.36■■□□□ 1.49
VPS53-216ENST00000574029 ATP6V0A1Q93050 837 aa24.36■■□□□ 1.49
VPS53-216ENST00000574029 SMIM10L2AP0DMW4 78 aa24.35■■□□□ 1.49
VPS53-216ENST00000574029 SMIM10L2BP0DMW5 78 aa24.35■■□□□ 1.49
VPS53-216ENST00000574029 NEDD9Q14511 834 aa24.35■■□□□ 1.49
VPS53-216ENST00000574029 PLEKHG4Q58EX7 1191 aa24.35■■□□□ 1.49
VPS53-216ENST00000574029 METTL7BQ6UX53 244 aa24.35■■□□□ 1.49
VPS53-216ENST00000574029 MB21D2Q8IYB1 491 aaPredicted RBP24.35■■□□□ 1.49
VPS53-216ENST00000574029 MAP3K14Q99558 947 aa24.35■■□□□ 1.49
VPS53-216ENST00000574029 USP26Q9BXU7 913 aa24.35■■□□□ 1.49
VPS53-216ENST00000574029 RNPEPQ9H4A4 650 aa24.35■■□□□ 1.49
VPS53-216ENST00000574029 NOP56O00567 594 aaKnown RBP24.34■■□□□ 1.49
VPS53-216ENST00000574029 SEMA3FQ13275 785 aa24.34■■□□□ 1.49
VPS53-216ENST00000574029 FAM117BQ6P1L5 589 aa24.34■■□□□ 1.49
VPS53-216ENST00000574029 MAP4K1Q92918 833 aa24.34■■□□□ 1.49
VPS53-216ENST00000574029 MTUS1Q9ULD2 1270 aa24.34■■□□□ 1.49
VPS53-216ENST00000574029 INSL6Q9Y581 213 aa24.34■■□□□ 1.49
VPS53-216ENST00000574029 TREHO43280 583 aa24.33■■□□□ 1.49
VPS53-216ENST00000574029 FIBPO43427 364 aa24.33■■□□□ 1.49
VPS53-216ENST00000574029 CAND2O75155 1236 aa24.33■■□□□ 1.49
VPS53-216ENST00000574029 AMHP03971 560 aa24.33■■□□□ 1.49
VPS53-216ENST00000574029 HTRA4P83105 476 aaPredicted RBP24.33■■□□□ 1.49
VPS53-216ENST00000574029 CYFIP1Q7L576 1253 aa24.33■■□□□ 1.49
VPS53-216ENST00000574029 GPR20Q99678 358 aa24.33■■□□□ 1.49
VPS53-216ENST00000574029 SPZ1Q9BXG8 430 aa24.33■■□□□ 1.49
VPS53-216ENST00000574029 RTEL1Q9NZ71 1219 aa24.33■■□□□ 1.49
VPS53-216ENST00000574029 SMARCA1P28370 1054 aa24.32■■□□□ 1.48
VPS53-216ENST00000574029 SP7Q8TDD2 431 aaPredicted RBP24.32■■□□□ 1.48
VPS53-216ENST00000574029 PIBF1Q8WXW3 757 aa24.32■■□□□ 1.48
VPS53-216ENST00000574029 PIK3CDO00329 1044 aa24.31■■□□□ 1.48
VPS53-216ENST00000574029 PCNX4Q63HM2 1172 aa24.31■■□□□ 1.48
VPS53-216ENST00000574029 XRRA1Q6P2D8 792 aa24.31■■□□□ 1.48
VPS53-216ENST00000574029 ZNF654Q8IZM8 581 aa24.31■■□□□ 1.48
VPS53-216ENST00000574029 RRP36Q96EU6 259 aaKnown RBP24.31■■□□□ 1.48
VPS53-216ENST00000574029 LY9Q9HBG7 655 aa24.31■■□□□ 1.48
VPS53-216ENST00000574029 SUPT16HQ9Y5B9 1047 aaKnown RBP24.31■■□□□ 1.48
VPS53-216ENST00000574029 NCOR1O75376 2440 aa24.31■■□□□ 1.48
VPS53-216ENST00000574029 MEIS2O14770 477 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 DDAH1O94760 285 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 GNAT1P11488 350 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 KIF5BP33176 963 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 USP17L6PQ6QN14 398 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 MYOCDQ8IZQ8 938 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 CTCFLQ8NI51 663 aaPredicted RBP24.3■■□□□ 1.48
VPS53-216ENST00000574029 SMARCC2Q8TAQ2 1214 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 SEPT8Q92599 483 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 SENP7Q9BQF6 1050 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 C17orf80Q9BSJ5 609 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 MTA3Q9BTC8 594 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 C1QTNF1Q9BXJ1 281 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 OSBPL7Q9BZF2 842 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 SETD4Q9NVD3 440 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 RAPGEFL1Q9UHV5 662 aa24.3■■□□□ 1.48
VPS53-216ENST00000574029 RBM8AQ9Y5S9 174 aaKnown RBP24.3■■□□□ 1.48
VPS53-216ENST00000574029 ADAM17P78536 824 aa24.29■■□□□ 1.48
VPS53-216ENST00000574029 CUL5Q93034 780 aa24.29■■□□□ 1.48
VPS53-216ENST00000574029 LZTS2Q9BRK4 669 aa24.29■■□□□ 1.48
VPS53-216ENST00000574029 MYL10Q9BUA6 226 aa24.29■■□□□ 1.48
VPS53-216ENST00000574029 ZNF215Q9UL58 517 aaPredicted RBP24.29■■□□□ 1.48
VPS53-216ENST00000574029 TELO2Q9Y4R8 837 aa24.29■■□□□ 1.48
VPS53-216ENST00000574029 BDP1A6H8Y1 2624 aa24.29■■□□□ 1.48
VPS53-216ENST00000574029 COL4A6Q14031 1691 aa24.28■■□□□ 1.48
VPS53-216ENST00000574029 FAM26DQ5JW98 314 aa24.28■■□□□ 1.48
VPS53-216ENST00000574029 TRIM50Q86XT4 487 aa24.28■■□□□ 1.48
VPS53-216ENST00000574029 FBXO22Q8NEZ5 403 aa24.28■■□□□ 1.48
VPS53-216ENST00000574029 TOP1MTQ969P6 601 aa24.28■■□□□ 1.48
VPS53-216ENST00000574029 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP24.27■■□□□ 1.48
VPS53-216ENST00000574029 CTSHP09668 335 aa24.27■■□□□ 1.48
VPS53-216ENST00000574029 NLRX1Q86UT6 975 aa24.27■■□□□ 1.48
VPS53-216ENST00000574029 SEC63Q9UGP8 760 aaKnown RBP24.27■■□□□ 1.48
VPS53-216ENST00000574029 LOC101059915A0A1B0GWI6 518 aaPredicted RBP24.26■■□□□ 1.47
VPS53-216ENST00000574029 GNAQP50148 359 aa24.26■■□□□ 1.47
VPS53-216ENST00000574029 UTP14CQ5TAP6 766 aaKnown RBP24.26■■□□□ 1.47
VPS53-216ENST00000574029 CASC1Q6TDU7 716 aa24.26■■□□□ 1.47
VPS53-216ENST00000574029 TMTC2Q8N394 836 aa24.26■■□□□ 1.47
VPS53-216ENST00000574029 SRBD1Q8N5C6 995 aaKnown RBP24.26■■□□□ 1.47
VPS53-216ENST00000574029 GIMAP8Q8ND71 665 aaPredicted RBP24.26■■□□□ 1.47
VPS53-216ENST00000574029 LMBR1Q8WVP7 490 aa24.26■■□□□ 1.47
VPS53-216ENST00000574029 SAMD11Q96NU1 681 aa24.26■■□□□ 1.47
VPS53-216ENST00000574029 UBE2ZQ9H832 354 aaPredicted RBP24.26■■□□□ 1.47
VPS53-216ENST00000574029 PRC1O43663 620 aa24.25■■□□□ 1.47
VPS53-216ENST00000574029 PLEKHA8P1O95397 391 aa24.25■■□□□ 1.47
VPS53-216ENST00000574029 ARHGAP4P98171 946 aa24.25■■□□□ 1.47
VPS53-216ENST00000574029 APBB2Q92870 758 aa24.25■■□□□ 1.47
VPS53-216ENST00000574029 GPRASP2Q96D09 838 aa24.25■■□□□ 1.47
VPS53-216ENST00000574029 TMEM87BQ96K49 555 aa24.25■■□□□ 1.47
VPS53-216ENST00000574029 EPHX3Q9H6B9 360 aa24.25■■□□□ 1.47
VPS53-216ENST00000574029 NRCAMQ92823 1304 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms