RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 LSG1Q9H089 658 aaKnown RBP8.65□□□□□ -1.02
NUP88-205ENST00000572809 VTA1Q9NP79 307 aa8.65□□□□□ -1.02
NUP88-205ENST00000572809 PDGFCQ9NRA1 345 aa8.65□□□□□ -1.02
NUP88-205ENST00000572809 MAD2L2Q9UI95 211 aa8.65□□□□□ -1.02
NUP88-205ENST00000572809 FKBPLQ9UIM3 349 aa8.65□□□□□ -1.02
NUP88-205ENST00000572809 MRPL11Q9Y3B7 192 aaKnown RBP8.65□□□□□ -1.02
NUP88-205ENST00000572809 TAF6LQ9Y6J9 622 aa8.65□□□□□ -1.02
NUP88-205ENST00000572809 DDX49Q9Y6V7 483 aaKnown RBP8.65□□□□□ -1.02
NUP88-205ENST00000572809 LAMA4Q16363 1823 aa8.65□□□□□ -1.02
NUP88-205ENST00000572809 ABCB11O95342 1321 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 PALM3A6NDB9 673 aaPredicted RBP8.64□□□□□ -1.03
NUP88-205ENST00000572809 MYADML2A6NDP7 307 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 B4DLN1 442 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 DYNC1LI2O43237 492 aaPredicted RBP8.64□□□□□ -1.03
NUP88-205ENST00000572809 ASGR1P07306 291 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 RFX1P22670 979 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 CST5P28325 142 aaPredicted RBP8.64□□□□□ -1.03
NUP88-205ENST00000572809 MRPL12P52815 198 aaKnown RBP8.64□□□□□ -1.03
NUP88-205ENST00000572809 NKX3-2P78367 333 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 TLE2Q04725 743 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 NECTIN1Q15223 517 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 QRICH1Q2TAL8 776 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 TRIM60Q495X7 471 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 TMEM67Q5HYA8 995 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 SLC30A10Q6XR72 485 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 MCF2L2Q86YR7 1114 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 MB21D2Q8IYB1 491 aaPredicted RBP8.64□□□□□ -1.03
NUP88-205ENST00000572809 TMTC2Q8N394 836 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 GLT1D1Q96MS3 346 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 AP5M1Q9H0R1 490 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 UPF3AQ9H1J1 476 aaKnown RBP8.64□□□□□ -1.03
NUP88-205ENST00000572809 PRDM5Q9NQX1 630 aaPredicted RBP8.64□□□□□ -1.03
NUP88-205ENST00000572809 STARD7Q9NQZ5 370 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 GNEQ9Y223 722 aaKnown RBP8.64□□□□□ -1.03
NUP88-205ENST00000572809 Q9Y3F1 56 aa8.64□□□□□ -1.03
NUP88-205ENST00000572809 ELP1O95163 1332 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 SOBPA7XYQ1 873 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 ZBBXA8MT70 800 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 DCDC2CA8MYV0 355 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 SLC27A2O14975 620 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 ZBTB5O15062 677 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 CTAGE5O15320 804 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 ZEB2O60315 1214 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 MCM5P33992 734 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 ANTXR2P58335 489 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 SH3BP2P78314 561 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 BEX3Q00994 111 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 KCNMA1Q12791 1236 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 TROAPQ12815 778 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 GRM4Q14833 912 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 TMEM63BQ5T3F8 832 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 CREB3L3Q68CJ9 461 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 CASC1Q6TDU7 716 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 SH3RF1Q7Z6J0 888 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 CATIPQ7Z7H3 387 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 FBXO16Q8IX29 292 aaPredicted RBP8.63□□□□□ -1.03
NUP88-205ENST00000572809 TDHQ8IZJ6 230 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 SYTL5Q8TDW5 730 aaPredicted RBP8.63□□□□□ -1.03
NUP88-205ENST00000572809 PBXIP1Q96AQ6 731 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 MTMR8Q96EF0 704 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 TOX2Q96NM4 488 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 TAAR1Q96RJ0 339 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 MTA3Q9BTC8 594 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 AMNQ9BXJ7 453 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 WDR11Q9BZH6 1224 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 RIOX1Q9H6W3 641 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 ANO2Q9NQ90 1003 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 EVA1BQ9NVM1 165 aa8.63□□□□□ -1.03
NUP88-205ENST00000572809 RBM47A0AV96 593 aaKnown RBP8.62□□□□□ -1.03
NUP88-205ENST00000572809 TRIM43BA6NCK2 446 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 ARVCFO00192 962 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 PRC1O43663 620 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 PQBP1O60828 265 aaKnown RBP8.62□□□□□ -1.03
NUP88-205ENST00000572809 CABYRO75952 493 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 F12P00748 615 aaPredicted RBP8.62□□□□□ -1.03
NUP88-205ENST00000572809 CFBP00751 764 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 CLTBP09497 229 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 EDNRBP24530 442 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 CDK7P50613 346 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 FAAP100Q0VG06 881 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 TRAF1Q13077 416 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 FSCN1Q16658 493 aaKnown RBP8.62□□□□□ -1.03
NUP88-205ENST00000572809 DUSP28Q4G0W2 176 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 RNF20Q5VTR2 975 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 MRPL14Q6P1L8 145 aaKnown RBP8.62□□□□□ -1.03
NUP88-205ENST00000572809 ANKRD33Q7Z3H0 272 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 TLK2Q86UE8 772 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 NSUN6Q8TEA1 469 aaKnown RBP8.62□□□□□ -1.03
NUP88-205ENST00000572809 ZNF592Q92610 1267 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 BADQ92934 168 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 TRIM43Q96BQ3 446 aaPredicted RBP8.62□□□□□ -1.03
NUP88-205ENST00000572809 TMEM87BQ96K49 555 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 PIGSQ96S52 555 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 MAP3K14Q99558 947 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 LY9Q9HBG7 655 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 PDLIM7Q9NR12 457 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 TMEM39AQ9NV64 488 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 MAP3K20Q9NYL2 800 aaKnown RBP8.62□□□□□ -1.03
NUP88-205ENST00000572809 PCDHA1Q9Y5I3 950 aa8.62□□□□□ -1.03
NUP88-205ENST00000572809 MCM3APO60318 1980 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms