RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 GNA11P29992 359 aa23.02■■□□□ 1.28
NUP88-204ENST00000572290 SSRP1Q08945 709 aaKnown RBP23.02■■□□□ 1.28
NUP88-204ENST00000572290 PTGISQ16647 500 aa23.02■■□□□ 1.28
NUP88-204ENST00000572290 MCTP2Q6DN12 878 aa23.02■■□□□ 1.28
NUP88-204ENST00000572290 GDF6Q6KF10 455 aaPredicted RBP23.02■■□□□ 1.28
NUP88-204ENST00000572290 CCDC148Q8NFR7 591 aa23.02■■□□□ 1.28
NUP88-204ENST00000572290 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.02■■□□□ 1.28
NUP88-204ENST00000572290 C16orf70Q9BSU1 422 aa23.02■■□□□ 1.28
NUP88-204ENST00000572290 WNT8AQ9H1J5 351 aa23.02■■□□□ 1.28
NUP88-204ENST00000572290 HDAC6Q9UBN7 1215 aa23.02■■□□□ 1.28
NUP88-204ENST00000572290 GTF2IRD1Q9UHL9 959 aa23.02■■□□□ 1.28
NUP88-204ENST00000572290 LGALS2P05162 132 aa23.01■■□□□ 1.27
NUP88-204ENST00000572290 SREBF1P36956 1147 aa23.01■■□□□ 1.27
NUP88-204ENST00000572290 SP4Q02446 784 aa23.01■■□□□ 1.27
NUP88-204ENST00000572290 GPR153Q6NV75 609 aa23.01■■□□□ 1.27
NUP88-204ENST00000572290 C16orf59Q7L2K0 433 aa23.01■■□□□ 1.27
NUP88-204ENST00000572290 IL23AQ9NPF7 189 aa23.01■■□□□ 1.27
NUP88-204ENST00000572290 KIAA1217Q5T5P2 1943 aa23■■□□□ 1.27
NUP88-204ENST00000572290 ACRP10323 421 aa23■■□□□ 1.27
NUP88-204ENST00000572290 BFSP2Q13515 415 aa23■■□□□ 1.27
NUP88-204ENST00000572290 ANKRD1Q15327 319 aa23■■□□□ 1.27
NUP88-204ENST00000572290 CEP55Q53EZ4 464 aa23■■□□□ 1.27
NUP88-204ENST00000572290 TMEM240Q5SV17 173 aa23■■□□□ 1.27
NUP88-204ENST00000572290 PSRC1Q6PGN9 363 aaPredicted RBP23■■□□□ 1.27
NUP88-204ENST00000572290 REXO1Q8N1G1 1221 aaKnown RBP23■■□□□ 1.27
NUP88-204ENST00000572290 BICD2Q8TD16 824 aa23■■□□□ 1.27
NUP88-204ENST00000572290 SCLYQ96I15 445 aa23■■□□□ 1.27
NUP88-204ENST00000572290 SLKQ9H2G2 1235 aaPredicted RBP23■■□□□ 1.27
NUP88-204ENST00000572290 PKD2L1Q9P0L9 805 aa23■■□□□ 1.27
NUP88-204ENST00000572290 VPS54Q9P1Q0 977 aa23■■□□□ 1.27
NUP88-204ENST00000572290 H3BRB1 525 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 DEXIO95424 95 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 ZNF76P36508 570 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 AK2P54819 239 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 ARHGAP4P98171 946 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 ZNF365Q70YC5 407 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 RETREG2Q8NC44 543 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 CYP2W1Q8TAV3 490 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 TUT1Q9H6E5 874 aaKnown RBP22.99■■□□□ 1.27
NUP88-204ENST00000572290 SH3GLB2Q9NR46 395 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 KCNH7Q9NS40 1196 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 TPCN1Q9ULQ1 816 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 TELO2Q9Y4R8 837 aa22.99■■□□□ 1.27
NUP88-204ENST00000572290 SCN10AQ9Y5Y9 1956 aa22.98■■□□□ 1.27
NUP88-204ENST00000572290 PITPNM1O00562 1244 aa22.98■■□□□ 1.27
NUP88-204ENST00000572290 ADAMTS3O15072 1205 aa22.98■■□□□ 1.27
NUP88-204ENST00000572290 SCRN1Q12765 414 aa22.98■■□□□ 1.27
NUP88-204ENST00000572290 UTP14CQ5TAP6 766 aaKnown RBP22.98■■□□□ 1.27
NUP88-204ENST00000572290 RPUSD2Q8IZ73 545 aaKnown RBP22.98■■□□□ 1.27
NUP88-204ENST00000572290 CCDC155Q8N6L0 562 aa22.98■■□□□ 1.27
NUP88-204ENST00000572290 CTAGE1Q96RT6 745 aa22.98■■□□□ 1.27
NUP88-204ENST00000572290 PFKFB2O60825 505 aa22.97■■□□□ 1.27
NUP88-204ENST00000572290 CDKL5O76039 1030 aa22.97■■□□□ 1.27
NUP88-204ENST00000572290 ARP10275 920 aa22.97■■□□□ 1.27
NUP88-204ENST00000572290 NLRP5P59047 1200 aa22.97■■□□□ 1.27
NUP88-204ENST00000572290 CAGE1Q8TC20 777 aa22.97■■□□□ 1.27
NUP88-204ENST00000572290 SEPT1Q8WYJ6 367 aa22.97■■□□□ 1.27
NUP88-204ENST00000572290 ZNF215Q9UL58 517 aaPredicted RBP22.97■■□□□ 1.27
NUP88-204ENST00000572290 LAMA3Q16787 3333 aa22.97■■□□□ 1.27
NUP88-204ENST00000572290 MEIS1O00470 390 aa22.96■■□□□ 1.27
NUP88-204ENST00000572290 FGBP02675 491 aa22.96■■□□□ 1.27
NUP88-204ENST00000572290 CYP3A4P08684 503 aa22.96■■□□□ 1.27
NUP88-204ENST00000572290 TCF7P36402 384 aaPredicted RBP22.96■■□□□ 1.27
NUP88-204ENST00000572290 PTK7Q13308 1070 aa22.96■■□□□ 1.27
NUP88-204ENST00000572290 NIPA1Q7RTP0 329 aa22.96■■□□□ 1.27
NUP88-204ENST00000572290 TRIM50Q86XT4 487 aa22.96■■□□□ 1.27
NUP88-204ENST00000572290 RASGRP4Q8TDF6 673 aa22.96■■□□□ 1.27
NUP88-204ENST00000572290 CRYGNQ8WXF5 182 aa22.96■■□□□ 1.27
NUP88-204ENST00000572290 GSTTP1A0A1W2PQM5 241 aa22.95■■□□□ 1.26
NUP88-204ENST00000572290 C17orf102A2RUQ5 167 aa22.95■■□□□ 1.26
NUP88-204ENST00000572290 NFASCO94856 1347 aa22.95■■□□□ 1.26
NUP88-204ENST00000572290 IQCF3P0C7M6 154 aa22.95■■□□□ 1.26
NUP88-204ENST00000572290 RFC2P35250 354 aa22.95■■□□□ 1.26
NUP88-204ENST00000572290 NEK4P51957 841 aa22.95■■□□□ 1.26
NUP88-204ENST00000572290 SMAD3P84022 425 aaKnown RBP22.95■■□□□ 1.26
NUP88-204ENST00000572290 ZNF200P98182 395 aaPredicted RBP22.95■■□□□ 1.26
NUP88-204ENST00000572290 C8orf34Q49A92 452 aa22.95■■□□□ 1.26
NUP88-204ENST00000572290 AFAP1L1Q8TED9 768 aa22.95■■□□□ 1.26
NUP88-204ENST00000572290 DHX38Q92620 1227 aaKnown RBP22.95■■□□□ 1.26
NUP88-204ENST00000572290 SDF4Q9BRK5 362 aa22.95■■□□□ 1.26
NUP88-204ENST00000572290 MTIF3Q9H2K0 278 aaKnown RBP22.95■■□□□ 1.26
NUP88-204ENST00000572290 AGO4Q9HCK5 861 aaKnown RBP22.95■■□□□ 1.26
NUP88-204ENST00000572290 JPH1Q9HDC5 661 aaPredicted RBP22.95■■□□□ 1.26
NUP88-204ENST00000572290 FAM86B1E9PN63 330 aa22.94■■□□□ 1.26
NUP88-204ENST00000572290 PFKMP08237 780 aa22.94■■□□□ 1.26
NUP88-204ENST00000572290 FAM86B2P0C5J1 330 aa22.94■■□□□ 1.26
NUP88-204ENST00000572290 SMIM10L2AP0DMW4 78 aa22.94■■□□□ 1.26
NUP88-204ENST00000572290 SMIM10L2BP0DMW5 78 aa22.94■■□□□ 1.26
NUP88-204ENST00000572290 HIC1Q14526 733 aa22.94■■□□□ 1.26
NUP88-204ENST00000572290 RASIP1Q5U651 963 aa22.94■■□□□ 1.26
NUP88-204ENST00000572290 PLA2G4DQ86XP0 818 aa22.94■■□□□ 1.26
NUP88-204ENST00000572290 HERVK_113Q902F9 699 aa22.94■■□□□ 1.26
NUP88-204ENST00000572290 SLC9A2Q9UBY0 812 aa22.94■■□□□ 1.26
NUP88-204ENST00000572290 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.93■■□□□ 1.26
NUP88-204ENST00000572290 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.93■■□□□ 1.26
NUP88-204ENST00000572290 RBL2Q08999 1139 aa22.93■■□□□ 1.26
NUP88-204ENST00000572290 ITGB3BPQ13352 177 aaPredicted RBP22.93■■□□□ 1.26
NUP88-204ENST00000572290 DEFB128Q7Z7B8 93 aa22.93■■□□□ 1.26
NUP88-204ENST00000572290 FAM177A1Q8N128 213 aaPredicted RBP22.93■■□□□ 1.26
NUP88-204ENST00000572290 DEFB123Q8N688 67 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms