RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FOSP01100 380 aaPredicted RBP7.47□□□□□ -1.21
VPS53-212ENST00000572259 LMOD3Q0VAK6 560 aa7.47□□□□□ -1.21
VPS53-212ENST00000572259 ZYXQ15942 572 aaKnown RBP7.47□□□□□ -1.21
VPS53-212ENST00000572259 IL17REQ8NFR9 667 aa7.47□□□□□ -1.21
VPS53-212ENST00000572259 RIN3Q8TB24 985 aa7.47□□□□□ -1.21
VPS53-212ENST00000572259 SLC6A18Q96N87 628 aa7.47□□□□□ -1.21
VPS53-212ENST00000572259 PHAXQ9H814 394 aaKnown RBP7.47□□□□□ -1.21
VPS53-212ENST00000572259 KANSL2Q9H9L4 492 aa7.47□□□□□ -1.21
VPS53-212ENST00000572259 ARNT2Q9HBZ2 717 aa7.47□□□□□ -1.21
VPS53-212ENST00000572259 LRP5O75197 1615 aa7.47□□□□□ -1.21
VPS53-212ENST00000572259 C5P01031 1676 aa7.47□□□□□ -1.21
VPS53-212ENST00000572259 DDAH1O94760 285 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 UBOX5O94941 541 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 IGHA1P01876 353 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 FGAP02671 866 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 MAN1A1P33908 653 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 ADMP35318 185 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 NFIAQ12857 509 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 IFRD2Q12894 506 aaPredicted RBP7.46□□□□□ -1.22
VPS53-212ENST00000572259 SLC39A6Q13433 755 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 TAF7Q15545 349 aaPredicted RBP7.46□□□□□ -1.22
VPS53-212ENST00000572259 ZNF790Q6PG37 636 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 ARHGAP27Q6ZUM4 889 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 COL23A1Q86Y22 540 aaPredicted RBP7.46□□□□□ -1.22
VPS53-212ENST00000572259 RAVER1Q8IY67 606 aaKnown RBP7.46□□□□□ -1.22
VPS53-212ENST00000572259 LINC00116Q8NCU8 138 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 PKNOX2Q96KN3 472 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 FMNL2Q96PY5 1086 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 DBNDD2Q9BQY9 259 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 CCDC113Q9H0I3 377 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 ST7Q9NRC1 585 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 GTF2IRD1Q9UHL9 959 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 ANAPC4Q9UJX5 808 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 ATP8A1Q9Y2Q0 1164 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 MSRB2Q9Y3D2 182 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 ZNF831Q5JPB2 1677 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 PNPLA7Q6ZV29 1317 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 CNTNAP4Q9C0A0 1308 aa7.46□□□□□ -1.22
VPS53-212ENST00000572259 PAPPAQ13219 1627 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 DLG5Q8TDM6 1919 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 C4BP0C0L5 1744 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 ALG1L2C9J202 215 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 RPS6KA4O75676 772 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 IGLV1-40P01703 118 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 PROCP04070 461 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 FSTP19883 344 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 PMLP29590 882 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 RFC4P35249 363 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 CDKN1CP49918 316 aaPredicted RBP7.45□□□□□ -1.22
VPS53-212ENST00000572259 RIPK4P57078 832 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 ITPK1Q13572 414 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 BBS9Q3SYG4 887 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 GNPTABQ3T906 1256 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 SYCP2LQ5T4T6 812 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 ZNF280DQ6N043 979 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 PPP4R4Q6NUP7 873 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 CNPY4Q8N129 248 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 LILRB2Q8N423 598 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 DNAJB8Q8NHS0 232 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 PPP1R13LQ8WUF5 828 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 RUNDC1Q96C34 613 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 PLEKHF1Q96S99 279 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 OSBPL1AQ9BXW6 950 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 PDGFDQ9GZP0 370 aaPredicted RBP7.45□□□□□ -1.22
VPS53-212ENST00000572259 CASS4Q9NQ75 786 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 PRDM5Q9NQX1 630 aaPredicted RBP7.45□□□□□ -1.22
VPS53-212ENST00000572259 SCINQ9Y6U3 715 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 LTBP3Q9NS15 1303 aa7.45□□□□□ -1.22
VPS53-212ENST00000572259 MYH14Q7Z406 1995 aaKnown RBP7.44□□□□□ -1.22
VPS53-212ENST00000572259 CASZ1Q86V15 1759 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 FAM170BA6NMN3 283 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 WDR64B1ANS9 1081 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 NRDCO43847 1150 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 EOMESO95936 686 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 CRKLP46109 303 aaKnown RBP7.44□□□□□ -1.22
VPS53-212ENST00000572259 RNF4P78317 190 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 SLC7A5Q01650 507 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 RAPGEF1Q13905 1077 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 SFRP5Q5T4F7 317 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 VHLLQ6RSH7 139 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 MCM10Q7L590 875 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 TMEM192Q8IY95 271 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 GATA6Q92908 595 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 COX4I2Q96KJ9 171 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 KREMEN1Q96MU8 473 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 DNAJC7Q99615 494 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 METTL22Q9BUU2 404 aaPredicted RBP7.44□□□□□ -1.22
VPS53-212ENST00000572259 SUCOQ9UBS9 1254 aaKnown RBP7.44□□□□□ -1.22
VPS53-212ENST00000572259 PLAAQ9Y263 795 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 UBR3Q6ZT12 1888 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 CEMIPQ8WUJ3 1361 aa7.44□□□□□ -1.22
VPS53-212ENST00000572259 MRC1P22897 1456 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 TUBGCP6Q96RT7 1819 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 A0A087WZG4 1122 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 CFAP69A5D8W1 941 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 CCDC85CA6NKD9 419 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 ALDH1L1O75891 902 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 F13BP05160 661 aa7.43□□□□□ -1.22
VPS53-212ENST00000572259 SNRPA1P09661 255 aaKnown RBP7.43□□□□□ -1.22
VPS53-212ENST00000572259 CNGA1P29973 690 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms