RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 RAVER2Q9HCJ3 691 aaKnown RBP7□□□□□ -1.29
VPS53-208ENST00000570650 Q9Y3F1 56 aa7□□□□□ -1.29
VPS53-208ENST00000570650 TNKSO95271 1327 aa7□□□□□ -1.29
VPS53-208ENST00000570650 COL4A4P53420 1690 aaPredicted RBP7□□□□□ -1.29
VPS53-208ENST00000570650 ASB14A6NK59 587 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 BAIAP3O94812 1187 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 OAZ1P54368 228 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 GDF10P55107 478 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 SLC9C2Q5TAH2 1124 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 C12orf60Q5U649 245 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 IQSEC1Q6DN90 963 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 C16orf86Q6ZW13 317 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 SPRED2Q7Z698 418 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 PLEKHM2Q8IWE5 1019 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 LCORLQ8N3X6 602 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 FAM133AQ8N9E0 248 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 RETREG2Q8NC44 543 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 SSH3Q8TE77 659 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 IRF7Q92985 503 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 EAF2Q96CJ1 260 aaPredicted RBP6.99□□□□□ -1.29
VPS53-208ENST00000570650 CALR3Q96L12 384 aaKnown RBP6.99□□□□□ -1.29
VPS53-208ENST00000570650 FTOQ9C0B1 505 aaKnown RBP eCLIP6.99□□□□□ -1.29
VPS53-208ENST00000570650 ATP8A2Q9NTI2 1148 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 TRMT13Q9NUP7 481 aaKnown RBP6.99□□□□□ -1.29
VPS53-208ENST00000570650 NOD1Q9Y239 953 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 ZNF532Q9HCE3 1301 aa6.99□□□□□ -1.29
VPS53-208ENST00000570650 SCN5AQ14524 2016 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 CYP2D7A0A087X1C5 515 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 LCHNA4D1U4 455 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 TMEM229AB2RXF0 380 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 USP17L12C9JPN9 530 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 USP17L21D6R901 530 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 F5H6K3 240 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 NDUFB10O96000 172 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 IQCF3P0C7M6 154 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 VSIG8P0DPA2 414 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 PTGS1P23219 599 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 GMPRP36959 345 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 KCNJ6P48051 423 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 ATP8B2P98198 1209 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 CNTN2Q02246 1040 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 KLRC3Q07444 240 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 BFSP2Q13515 415 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 MFSD14AQ96MC6 490 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 ACAD9Q9H845 621 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 ARMT1Q9H993 441 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 SUGCTQ9HAC7 445 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 SLC38A10Q9HBR0 1119 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 CUEDC1Q9NWM3 386 aaPredicted RBP6.98□□□□□ -1.29
VPS53-208ENST00000570650 TFIP11Q9UBB9 837 aaKnown RBP6.98□□□□□ -1.29
VPS53-208ENST00000570650 NOP58Q9Y2X3 529 aaKnown RBP6.98□□□□□ -1.29
VPS53-208ENST00000570650 ZNF318Q5VUA4 2279 aa6.98□□□□□ -1.29
VPS53-208ENST00000570650 TCRBV5S4A2TA0A5A2 114 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 SPATA31C2B4DYI2 1134 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 IPO8O15397 1037 aaKnown RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 PRKAB2O43741 272 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 LZTS3O60299 673 aaPredicted RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 BCAR3O75815 825 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 MBD4O95243 580 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 TRIM27P14373 513 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 RARSP54136 660 aaKnown RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 ERVK-21P61565 698 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 WDR5P61964 334 aaKnown RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 PURAQ00577 322 aaKnown RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 LRRFIP1Q32MZ4 808 aaKnown RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 FAM47CQ5HY64 1035 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 TAPT1Q6NXT6 567 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 HFE2Q6ZVN8 426 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 EEPD1Q7L9B9 569 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 FBXO16Q8IX29 292 aaPredicted RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 TRMT2AQ8IZ69 625 aaKnown RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 NEK9Q8TD19 979 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS53-208ENST00000570650 TGS1Q96RS0 853 aaKnown RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 ZSCAN10Q96SZ4 725 aaPredicted RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 MTG1Q9BT17 334 aaPredicted RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 VTA1Q9NP79 307 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 A1CFQ9NQ94 594 aaKnown RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 PDGFCQ9NRA1 345 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 HOMER2Q9NSB8 354 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 NYAP2Q9P242 653 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 PRKAG3Q9UGI9 489 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 FEM1BQ9UK73 627 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 MTUS1Q9ULD2 1270 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 KIAA1024Q9UPX6 916 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 FAM50BQ9Y247 325 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 MAFBQ9Y5Q3 323 aaPredicted RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 BAZ2AQ9UIF9 1905 aaKnown RBP6.97□□□□□ -1.29
VPS53-208ENST00000570650 TET1Q8NFU7 2136 aa6.97□□□□□ -1.29
VPS53-208ENST00000570650 TANC1Q9C0D5 1861 aa6.96□□□□□ -1.29
VPS53-208ENST00000570650 PALM3A6NDB9 673 aaPredicted RBP6.96□□□□□ -1.3
VPS53-208ENST00000570650 WIPF1O43516 503 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 GJB5O95377 273 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 MYL3P08590 195 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 CPT1AP50416 773 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 CLDN10P78369 228 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 FOXK2Q01167 660 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 ZP2Q05996 745 aa6.96□□□□□ -1.3
VPS53-208ENST00000570650 PTPN11Q06124 597 aaPredicted RBP6.96□□□□□ -1.3
VPS53-208ENST00000570650 TLR1Q15399 786 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms