RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 GALR2O43603 387 aaPredicted RBP12.95□□□□□ -0.34
VPS53-207ENST00000570510 SMARCA5O60264 1052 aaPredicted RBP12.95□□□□□ -0.34
VPS53-207ENST00000570510 EIF2AK2P19525 551 aaKnown RBP12.95□□□□□ -0.34
VPS53-207ENST00000570510 NRIP1P48552 1158 aa12.95□□□□□ -0.34
VPS53-207ENST00000570510 COASYQ13057 564 aa12.95□□□□□ -0.34
VPS53-207ENST00000570510 KCNV1Q6PIU1 500 aa12.95□□□□□ -0.34
VPS53-207ENST00000570510 EFHBQ8N7U6 833 aa12.95□□□□□ -0.34
VPS53-207ENST00000570510 NKD2Q969F2 451 aaPredicted RBP12.95□□□□□ -0.34
VPS53-207ENST00000570510 MSLNLQ96KJ4 702 aa12.95□□□□□ -0.34
VPS53-207ENST00000570510 TMEM47Q9BQJ4 181 aa12.95□□□□□ -0.34
VPS53-207ENST00000570510 MAF1Q9H063 256 aa12.95□□□□□ -0.34
VPS53-207ENST00000570510 MLXIPQ9HAP2 919 aa12.95□□□□□ -0.34
VPS53-207ENST00000570510 MYO7AQ13402 2215 aa12.94□□□□□ -0.34
VPS53-207ENST00000570510 H3BRB1 525 aa12.94□□□□□ -0.34
VPS53-207ENST00000570510 TREHO43280 583 aa12.94□□□□□ -0.34
VPS53-207ENST00000570510 DHX16O60231 1041 aaKnown RBP12.94□□□□□ -0.34
VPS53-207ENST00000570510 MYCLP12524 364 aaPredicted RBP12.94□□□□□ -0.34
VPS53-207ENST00000570510 ICAM3P32942 547 aa12.94□□□□□ -0.34
VPS53-207ENST00000570510 CBX2Q14781 532 aaPredicted RBP12.94□□□□□ -0.34
VPS53-207ENST00000570510 MCTP2Q6DN12 878 aa12.94□□□□□ -0.34
VPS53-207ENST00000570510 SYTL5Q8TDW5 730 aaPredicted RBP12.94□□□□□ -0.34
VPS53-207ENST00000570510 ASIC4Q96FT7 647 aa12.94□□□□□ -0.34
VPS53-207ENST00000570510 RIPOR3Q96MK2 946 aa12.94□□□□□ -0.34
VPS53-207ENST00000570510 SEC62Q99442 399 aaKnown RBP12.94□□□□□ -0.34
VPS53-207ENST00000570510 TUT1Q9H6E5 874 aaKnown RBP12.94□□□□□ -0.34
VPS53-207ENST00000570510 TLE6Q9H808 572 aa12.94□□□□□ -0.34
VPS53-207ENST00000570510 BARX2Q9UMQ3 279 aaPredicted RBP12.94□□□□□ -0.34
VPS53-207ENST00000570510 DDX19BQ9UMR2 479 aa12.94□□□□□ -0.34
VPS53-207ENST00000570510 PLAGL2Q9UPG8 496 aa12.94□□□□□ -0.34
VPS53-207ENST00000570510 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.94□□□□□ -0.34
VPS53-207ENST00000570510 ABCB11O95342 1321 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 NOP56O00567 594 aaKnown RBP12.93□□□□□ -0.34
VPS53-207ENST00000570510 GGPS1O95749 300 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 NR3C2P08235 984 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 SRGAP2BP0DMP2 458 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 SMIM10L2AP0DMW4 78 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 SMIM10L2BP0DMW5 78 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 HSPD1P10809 573 aaKnown RBP12.93□□□□□ -0.34
VPS53-207ENST00000570510 PDHBP11177 359 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 ZNF543Q08ER8 600 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 HIC1Q14526 733 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 PTPN21Q16825 1174 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 HSDL1Q3SXM5 330 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 NAALADL2Q58DX5 795 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 CELF3Q5SZQ8 465 aaKnown RBP12.93□□□□□ -0.34
VPS53-207ENST00000570510 GPATCH4Q5T3I0 446 aaKnown RBP12.93□□□□□ -0.34
VPS53-207ENST00000570510 MYSM1Q5VVJ2 828 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 SIRT2Q8IXJ6 389 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 ADSSL1Q8N142 457 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 CLP1Q92989 425 aaKnown RBP12.93□□□□□ -0.34
VPS53-207ENST00000570510 CLEC1BQ9P126 229 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 MRPL11Q9Y3B7 192 aaKnown RBP12.93□□□□□ -0.34
VPS53-207ENST00000570510 SPTBN4Q9H254 2564 aa12.93□□□□□ -0.34
VPS53-207ENST00000570510 PPFIA3O75145 1194 aa12.92□□□□□ -0.34
VPS53-207ENST00000570510 CFBP00751 764 aa12.92□□□□□ -0.34
VPS53-207ENST00000570510 NBL1P41271 181 aa12.92□□□□□ -0.34
VPS53-207ENST00000570510 TSHZ3Q63HK5 1081 aa12.92□□□□□ -0.34
VPS53-207ENST00000570510 TBC1D5Q92609 795 aa12.92□□□□□ -0.34
VPS53-207ENST00000570510 P2RX5Q93086 422 aa12.92□□□□□ -0.34
VPS53-207ENST00000570510 MFSD1Q9H3U5 465 aa12.92□□□□□ -0.34
VPS53-207ENST00000570510 RNPEPQ9H4A4 650 aa12.92□□□□□ -0.34
VPS53-207ENST00000570510 CCDC171Q6TFL3 1326 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 NLRC5Q86WI3 1866 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 FSD2A1L4K1 749 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 ORC4O43929 436 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 GOLGA8HP0CJ92 632 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 GHRP10912 638 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 ATF7P17544 494 aaPredicted RBP12.91□□□□□ -0.34
VPS53-207ENST00000570510 SP100P23497 879 aaPredicted RBP12.91□□□□□ -0.34
VPS53-207ENST00000570510 CDC37Q16543 378 aaPredicted RBP12.91□□□□□ -0.34
VPS53-207ENST00000570510 ADGRD2Q7Z7M1 963 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 RSPH3Q86UC2 560 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 POF1BQ8WVV4 589 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 NEK1Q96PY6 1258 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 C16orf70Q9BSU1 422 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 USP26Q9BXU7 913 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 UBA5Q9GZZ9 404 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 PXMP2Q9NR77 195 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 TSHZ2Q9NRE2 1034 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 SETD4Q9NVD3 440 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 ZNF215Q9UL58 517 aaPredicted RBP12.91□□□□□ -0.34
VPS53-207ENST00000570510 CACNA1HO95180 2353 aa12.91□□□□□ -0.34
VPS53-207ENST00000570510 COL4A6Q14031 1691 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 ENPP3O14638 875 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 PDGFBP01127 241 aaPredicted RBP12.9□□□□□ -0.34
VPS53-207ENST00000570510 ITGB1P05556 798 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 TGFB3P10600 412 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 HOXD8P13378 290 aaPredicted RBP12.9□□□□□ -0.34
VPS53-207ENST00000570510 NOVP48745 357 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 ARHGAP4P98171 946 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 SPOUT1Q5T280 376 aaKnown RBP12.9□□□□□ -0.34
VPS53-207ENST00000570510 FRMD5Q7Z6J6 570 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 KLHL23Q8NBE8 558 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 SPPL3Q8TCT6 385 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 KCNG4Q8TDN1 519 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 TTC14Q96N46 770 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 OSBPL7Q9BZF2 842 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 ZBTB40Q9NUA8 1239 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 TCP11L1Q9NUJ3 509 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 COL20A1Q9P218 1284 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms