RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 LBX2Q6XYB7 198 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.94□□□□□ -0.98
VPS39-213ENST00000570062 ENOX1Q8TC92 643 aaKnown RBP8.94□□□□□ -0.98
VPS39-213ENST00000570062 PDLIM2Q96JY6 352 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 RIT2Q99578 217 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 C7orf25Q9BPX7 421 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 GLIS2Q9BZE0 524 aaPredicted RBP8.94□□□□□ -0.98
VPS39-213ENST00000570062 DNAJC25Q9H1X3 360 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 KBTBD4Q9NVX7 518 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 TCEAL9Q9UHQ7 104 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 KCNH4Q9UQ05 1017 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 PCDHB3Q9Y5E6 796 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 SNCAIPQ9Y6H5 919 aa8.94□□□□□ -0.98
VPS39-213ENST00000570062 LOC102724159A0A0B4J2E5 919 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 A0A0G2JLL6 359 aaPredicted RBP8.93□□□□□ -0.98
VPS39-213ENST00000570062 MEIS1O00470 390 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 CBFA2T2O43439 604 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 DKC1O60832 514 aaKnown RBP eCLIP8.93□□□□□ -0.98
VPS39-213ENST00000570062 TDP2O95551 362 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 ALAS1P13196 640 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 STAT3P40763 770 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 HMGCS2P54868 508 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 HTRA3P83110 453 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 DPYDQ12882 1025 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 PNOCQ13519 176 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 MORC3Q14149 939 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 IQCB1Q15051 598 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 PWP2Q15269 919 aaKnown RBP8.93□□□□□ -0.98
VPS39-213ENST00000570062 IL17AQ16552 155 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 PRR16Q569H4 304 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 LDLRAD1Q5T700 205 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 ZNF658Q5TYW1 1059 aaPredicted RBP8.93□□□□□ -0.98
VPS39-213ENST00000570062 PCNX4Q63HM2 1172 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 RNF207Q6ZRF8 634 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 PRRT2Q7Z6L0 340 aaPredicted RBP8.93□□□□□ -0.98
VPS39-213ENST00000570062 NLRX1Q86UT6 975 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 FCHSD1Q86WN1 690 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 SNX29Q8TEQ0 813 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 SLC10A4Q96EP9 437 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 TRERF1Q96PN7 1200 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 IWS1Q96ST2 819 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 PANK2Q9BZ23 570 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 ACAD9Q9H845 621 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 TBC1D22BQ9NU19 505 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 FBXO28Q9NVF7 368 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 SLC45A1Q9Y2W3 748 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 ZNF536O15090 1300 aa8.93□□□□□ -0.98
VPS39-213ENST00000570062 MYH15Q9Y2K3 1946 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 PFASO15067 1338 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 FRMPD4Q14CM0 1322 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 ADM5C9JUS6 153 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 WNT7AO00755 349 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 OPLAHO14841 1288 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 IRF6O14896 467 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 ADAMTS3O15072 1205 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 SLC37A4O43826 429 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 RPN1P04843 607 aaKnown RBP8.92□□□□□ -0.98
VPS39-213ENST00000570062 RPA1P27694 616 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 CDC25BP30305 580 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 IRX3P78415 501 aaPredicted RBP8.92□□□□□ -0.98
VPS39-213ENST00000570062 SPAG1Q07617 926 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 SNAPC2Q13487 334 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 GNPTABQ3T906 1256 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 COBLL1Q53SF7 1204 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 EAPPQ56P03 285 aaPredicted RBP8.92□□□□□ -0.98
VPS39-213ENST00000570062 PRAMEF18Q5VWM3 479 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 FOXR2Q6PJQ5 311 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 USP49Q70CQ1 688 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 PLA2G4DQ86XP0 818 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 CPXCR1Q8N123 301 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 C2orf69Q8N8R5 385 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 ANKRD20A12PQ8NF67 263 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 DNERQ8NFT8 737 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 RDM1Q8NG50 284 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 ETNPPLQ8TBG4 499 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 NSUN6Q8TEA1 469 aaKnown RBP8.92□□□□□ -0.98
VPS39-213ENST00000570062 NOC3LQ8WTT2 800 aaKnown RBP8.92□□□□□ -0.98
VPS39-213ENST00000570062 CLEC4DQ8WXI8 215 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 HAS1Q92839 578 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 AGBL1Q96MI9 1066 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 CTAGE1Q96RT6 745 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 MXRA8Q9BRK3 442 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 POLR3CQ9BUI4 534 aaPredicted RBP8.92□□□□□ -0.98
VPS39-213ENST00000570062 RAVER2Q9HCJ3 691 aaKnown RBP8.92□□□□□ -0.98
VPS39-213ENST00000570062 TUFT1Q9NNX1 390 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 RNF146Q9NTX7 359 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 KCND2Q9NZV8 630 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 ADD3Q9UEY8 706 aaKnown RBP8.92□□□□□ -0.98
VPS39-213ENST00000570062 MAN1B1Q9UKM7 699 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 AGTPBP1Q9UPW5 1226 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 DNM3Q9UQ16 869 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 MYH6P13533 1939 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 TCHHQ07283 1943 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 MYH4Q9Y623 1939 aa8.92□□□□□ -0.98
VPS39-213ENST00000570062 RPTORQ8N122 1335 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 BICDL2A1A5D9 508 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 PSMA7O14818 248 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 NRDCO43847 1150 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 GAS7O60861 476 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 RHOBTB3O94955 611 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms