RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CLK2P49760 499 aaKnown RBP23.24■■□□□ 1.31
CLK3-225ENST00000569063 PKN1Q16512 942 aa23.24■■□□□ 1.31
CLK3-225ENST00000569063 RETREG2Q8NC44 543 aa23.24■■□□□ 1.31
CLK3-225ENST00000569063 JADE2Q9NQC1 790 aa23.24■■□□□ 1.31
CLK3-225ENST00000569063 H3BRB1 525 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 ATP9AO75110 1047 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 LGALS2P05162 132 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 PFKMP08237 780 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 IQCF3P0C7M6 154 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 KCNA2P16389 499 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 RFC2P35250 354 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 AP3B2Q13367 1082 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 MTMR1Q13613 665 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 CCDC155Q8N6L0 562 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 CAGE1Q8TC20 777 aa23.23■■□□□ 1.31
CLK3-225ENST00000569063 TUT1Q9H6E5 874 aaKnown RBP23.23■■□□□ 1.31
CLK3-225ENST00000569063 ESYT2A0FGR8 921 aa23.22■■□□□ 1.31
CLK3-225ENST00000569063 IFNAR1P17181 557 aa23.22■■□□□ 1.31
CLK3-225ENST00000569063 ZNF697Q5TEC3 545 aa23.22■■□□□ 1.31
CLK3-225ENST00000569063 PHKBQ93100 1093 aa23.22■■□□□ 1.31
CLK3-225ENST00000569063 ZNF274Q96GC6 653 aaPredicted RBP23.22■■□□□ 1.31
CLK3-225ENST00000569063 RNF26Q9BY78 433 aaPredicted RBP23.22■■□□□ 1.31
CLK3-225ENST00000569063 UPF3BQ9BZI7 483 aaKnown RBP23.22■■□□□ 1.31
CLK3-225ENST00000569063 ZMYND12Q9H0C1 365 aa23.22■■□□□ 1.31
CLK3-225ENST00000569063 MTIF3Q9H2K0 278 aaKnown RBP23.22■■□□□ 1.31
CLK3-225ENST00000569063 CCT2P78371 535 aaKnown RBP23.21■■□□□ 1.31
CLK3-225ENST00000569063 AKAP17AQ02040 695 aaKnown RBP23.21■■□□□ 1.31
CLK3-225ENST00000569063 RBL2Q08999 1139 aa23.21■■□□□ 1.31
CLK3-225ENST00000569063 PTK7Q13308 1070 aa23.21■■□□□ 1.31
CLK3-225ENST00000569063 AFAP1L1Q8TED9 768 aa23.21■■□□□ 1.31
CLK3-225ENST00000569063 CCDC12Q8WUD4 166 aaPredicted RBP23.21■■□□□ 1.31
CLK3-225ENST00000569063 DHX38Q92620 1227 aaKnown RBP23.21■■□□□ 1.31
CLK3-225ENST00000569063 MXRA8Q9BRK3 442 aa23.21■■□□□ 1.31
CLK3-225ENST00000569063 ANO3Q9BYT9 981 aa23.21■■□□□ 1.31
CLK3-225ENST00000569063 TMEM260Q9NX78 707 aa23.21■■□□□ 1.31
CLK3-225ENST00000569063 TELO2Q9Y4R8 837 aa23.21■■□□□ 1.31
CLK3-225ENST00000569063 HOXC8P31273 242 aa23.2■■□□□ 1.3
CLK3-225ENST00000569063 SREBF1P36956 1147 aa23.2■■□□□ 1.3
CLK3-225ENST00000569063 HIC1Q14526 733 aa23.2■■□□□ 1.3
CLK3-225ENST00000569063 OTOP2Q7RTS6 562 aa23.2■■□□□ 1.3
CLK3-225ENST00000569063 PGBD1Q96JS3 809 aa23.2■■□□□ 1.3
CLK3-225ENST00000569063 NCOA5Q9HCD5 579 aaKnown RBP23.2■■□□□ 1.3
CLK3-225ENST00000569063 PDRG1Q9NUG6 133 aa23.2■■□□□ 1.3
CLK3-225ENST00000569063 CXXC1Q9P0U4 656 aaPredicted RBP23.2■■□□□ 1.3
CLK3-225ENST00000569063 TMEM265A0A087WTH1 108 aa23.19■■□□□ 1.3
CLK3-225ENST00000569063 ANAPC15P60006 121 aa23.19■■□□□ 1.3
CLK3-225ENST00000569063 MCTP2Q6DN12 878 aa23.19■■□□□ 1.3
CLK3-225ENST00000569063 SLC26A6Q9BXS9 759 aa23.19■■□□□ 1.3
CLK3-225ENST00000569063 SEMA6BQ9H3T3 888 aa23.19■■□□□ 1.3
CLK3-225ENST00000569063 C6orf50Q9HD87 102 aa23.19■■□□□ 1.3
CLK3-225ENST00000569063 KCNH7Q9NS40 1196 aa23.19■■□□□ 1.3
CLK3-225ENST00000569063 DOCK5Q9H7D0 1870 aa23.18■■□□□ 1.3
CLK3-225ENST00000569063 EIF5BO60841 1220 aaKnown RBP23.18■■□□□ 1.3
CLK3-225ENST00000569063 CKBP12277 381 aa23.18■■□□□ 1.3
CLK3-225ENST00000569063 SELPP16109 830 aa23.18■■□□□ 1.3
CLK3-225ENST00000569063 ZNF200P98182 395 aaPredicted RBP23.18■■□□□ 1.3
CLK3-225ENST00000569063 SP4Q02446 784 aa23.18■■□□□ 1.3
CLK3-225ENST00000569063 CEP55Q53EZ4 464 aa23.18■■□□□ 1.3
CLK3-225ENST00000569063 DEFB128Q7Z7B8 93 aa23.18■■□□□ 1.3
CLK3-225ENST00000569063 CYP2W1Q8TAV3 490 aa23.18■■□□□ 1.3
CLK3-225ENST00000569063 SEPT1Q8WYJ6 367 aa23.18■■□□□ 1.3
CLK3-225ENST00000569063 GUCD1Q96NT3 240 aa23.18■■□□□ 1.3
CLK3-225ENST00000569063 ZNF215Q9UL58 517 aaPredicted RBP23.18■■□□□ 1.3
CLK3-225ENST00000569063 STXBP5LQ9Y2K9 1186 aa23.18■■□□□ 1.3
CLK3-225ENST00000569063 MEIS1O00470 390 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 PARNO95453 639 aaKnown RBP23.17■■□□□ 1.3
CLK3-225ENST00000569063 SMIM10L2AP0DMW4 78 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 SMIM10L2BP0DMW5 78 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 DNAJB2P25686 324 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 GNA11P29992 359 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 TCF7P36402 384 aaPredicted RBP23.17■■□□□ 1.3
CLK3-225ENST00000569063 ARHGAP4P98171 946 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 TRIM71Q2Q1W2 868 aaKnown RBP23.17■■□□□ 1.3
CLK3-225ENST00000569063 JAKMIP3Q5VZ66 844 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 LRRC8DQ7L1W4 858 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 SERINC5Q86VE9 423 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 CRYGNQ8WXF5 182 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 FAM161BQ96MY7 647 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 LARP6Q9BRS8 491 aaKnown RBP23.17■■□□□ 1.3
CLK3-225ENST00000569063 TTYH1Q9H313 450 aaPredicted RBP23.17■■□□□ 1.3
CLK3-225ENST00000569063 TANC1Q9C0D5 1861 aa23.17■■□□□ 1.3
CLK3-225ENST00000569063 GSTTP1A0A1W2PQM5 241 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 C17orf102A2RUQ5 167 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 GRXCR1A8MXD5 290 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 ADAMTS3O15072 1205 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 PPFIA3O75145 1194 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 ACTN1P12814 892 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 UTP14CQ5TAP6 766 aaKnown RBP23.16■■□□□ 1.3
CLK3-225ENST00000569063 NIPA1Q7RTP0 329 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 TRIM50Q86XT4 487 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 REXO1Q8N1G1 1221 aaKnown RBP23.16■■□□□ 1.3
CLK3-225ENST00000569063 IL17RAQ96F46 866 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 RNPEPQ9H4A4 650 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 SH3GLB2Q9NR46 395 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 PKD2L1Q9P0L9 805 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 SLC4A7Q9Y6M7 1214 aa23.16■■□□□ 1.3
CLK3-225ENST00000569063 NFASCO94856 1347 aa23.15■■□□□ 1.3
CLK3-225ENST00000569063 SCN5AQ14524 2016 aa23.15■■□□□ 1.3
CLK3-225ENST00000569063 CYP3A4P08684 503 aa23.15■■□□□ 1.3
CLK3-225ENST00000569063 ARP10275 920 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms