RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PWP2Q15269 919 aaKnown RBP15.91■□□□□ 0.14
VPS35-210ENST00000568784 CENPPQ6IPU0 288 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 DPP8Q6V1X1 898 aaPredicted RBP15.91■□□□□ 0.14
VPS35-210ENST00000568784 GUF1Q8N442 669 aaKnown RBP15.91■□□□□ 0.14
VPS35-210ENST00000568784 MARCH10Q8NA82 808 aaPredicted RBP15.91■□□□□ 0.14
VPS35-210ENST00000568784 SIK3Q9Y2K2 1263 aa15.91■□□□□ 0.14
VPS35-210ENST00000568784 BCL9O00512 1426 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 POTEB3A0JP26 581 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 POTECB2RU33 542 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 SERPING1P05155 500 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 KRT13P13646 458 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 STAT3P40763 770 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 HDLBPQ00341 1268 aaKnown RBP15.9■□□□□ 0.14
VPS35-210ENST00000568784 SF3B2Q13435 895 aaKnown RBP15.9■□□□□ 0.14
VPS35-210ENST00000568784 POTEBQ6S5H4 581 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 MMTAG2Q9BU76 263 aaKnown RBP15.9■□□□□ 0.14
VPS35-210ENST00000568784 VPS36Q86VN1 386 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 RAD54LQ92698 747 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 KAT2BQ92831 832 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 BLOC1S4Q9NUP1 217 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 NOVA2Q9UNW9 492 aaKnown RBP15.9■□□□□ 0.14
VPS35-210ENST00000568784 HNRNPH1P31943 449 aaKnown RBP15.9■□□□□ 0.14
VPS35-210ENST00000568784 PRPHP41219 470 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 MSL3Q8N5Y2 521 aaKnown RBP15.9■□□□□ 0.14
VPS35-210ENST00000568784 ZMYND12Q9H0C1 365 aa15.9■□□□□ 0.14
VPS35-210ENST00000568784 USP17L15C9J2P7 530 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 USP17L13C9JLJ4 530 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 USP17L11C9JVI0 530 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 USP17L18D6R9N7 530 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 USP17L22D6RA61 530 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 USP17L17D6RBQ6 530 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 USP17L19D6RCP7 530 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 USP17L20D6RJB6 530 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 ZNF76P36508 570 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 SNAP25P60880 206 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 LRRC63Q05C16 580 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 ACTN3Q08043 901 aaPredicted RBP15.89■□□□□ 0.13
VPS35-210ENST00000568784 USP17L24Q0WX57 530 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 MFSD14BQ5SR56 506 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 MCTP2Q6DN12 878 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 USP17L6PQ6QN14 398 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 GIMAP7Q8NHV1 300 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 AMACRQ9UHK6 382 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 TSKSQ9UJT2 592 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 BCS1LQ9Y276 419 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 FLT1P17948 1338 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 PHRF1Q9P1Y6 1649 aaKnown RBP15.89■□□□□ 0.13
VPS35-210ENST00000568784 TTBK2Q6IQ55 1244 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 RDH13Q8NBN7 331 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 LZTS2Q9BRK4 669 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 LRRC27Q9C0I9 530 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 SFI1A8K8P3 1242 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 ZNF804AQ7Z570 1209 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 PNMA5Q96PV4 448 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 CCT8L2Q96SF2 557 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 STK17AQ9UEE5 414 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 ATP8A1Q9Y2Q0 1164 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 ATP6V0A2Q9Y487 856 aa15.89■□□□□ 0.13
VPS35-210ENST00000568784 COL1A1P02452 1464 aaPredicted RBP15.88■□□□□ 0.13
VPS35-210ENST00000568784 A0A1W2PQJ5 194 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 SLC9A1P19634 815 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 NFIXQ14938 502 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 SBK1Q52WX2 424 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 EMILIN3Q9NT22 766 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 ZNF233A6NK53 670 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 PPP1R37O75864 691 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 COPB2P35606 906 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 KCNH2Q12809 1159 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 CCDC25Q86WR0 208 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 FGFBP2Q9BYJ0 223 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 ARMCX3Q9UH62 379 aaPredicted RBP15.88■□□□□ 0.13
VPS35-210ENST00000568784 PALM3A6NDB9 673 aaPredicted RBP15.88■□□□□ 0.13
VPS35-210ENST00000568784 ALKBH5Q6P6C2 394 aaKnown RBP15.88■□□□□ 0.13
VPS35-210ENST00000568784 ARFGAP2Q8N6H7 521 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 RPGRQ92834 1020 aaKnown RBP15.88■□□□□ 0.13
VPS35-210ENST00000568784 CELF4Q9BZC1 486 aaKnown RBP15.88■□□□□ 0.13
VPS35-210ENST00000568784 CEP72Q9P209 647 aa15.88■□□□□ 0.13
VPS35-210ENST00000568784 DAPK3O43293 454 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 CHMP2AO43633 222 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 MKRN4PQ13434 485 aaPredicted RBP15.87■□□□□ 0.13
VPS35-210ENST00000568784 E2F5Q15329 346 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 USH1GQ495M9 461 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 NLRP14Q86W24 1093 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 ZNF473Q8WTR7 871 aaKnown RBP15.87■□□□□ 0.13
VPS35-210ENST00000568784 ZC3H4Q9UPT8 1303 aaKnown RBP15.87■□□□□ 0.13
VPS35-210ENST00000568784 SLURP2P0DP57 97 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 MAP2K2P36507 400 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 ARHGAP44Q17R89 818 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 ATP6V1G3Q96LB4 118 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 MYH13Q9UKX3 1938 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 PVALEFA0A1B0GWK0 134 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 POTEFA5A3E0 1075 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 PLA2G4BP0C869 781 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 POTEIP0CG38 1075 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 RBM5P52756 815 aaKnown RBP eCLIP15.87■□□□□ 0.13
VPS35-210ENST00000568784 DHX9Q08211 1270 aaKnown RBP15.87■□□□□ 0.13
VPS35-210ENST00000568784 PRR16Q569H4 304 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 POTEGQ6S5H5 508 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 POTEEQ6S8J3 1075 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 CCDC91Q7Z6B0 441 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms