RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 CNNM4Q6P4Q7 775 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 REC114Q7Z4M0 266 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 FGD2Q7Z6J4 655 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 GALNT5Q7Z7M9 940 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 SRLQ86TD4 932 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 CCDC84Q86UT8 332 aaPredicted RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 TXNRD3Q86VQ6 643 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 SPATS2Q86XZ4 545 aaKnown RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 CMTR2Q8IYT2 770 aaKnown RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 GIMAP8Q8ND71 665 aaPredicted RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 GSTCDQ8NEC7 633 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 SLC7A3Q8WY07 619 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 GOLGA1Q92805 767 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 FUBP3Q96I24 572 aaKnown RBP eCLIP3.61□□□□□ -1.83
VPS35-209ENST00000568642 TBATAQ96M53 351 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 PPM1MQ96MI6 270 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 NECAB3Q96P71 396 aaPredicted RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 SSBP4Q9BWG4 385 aaPredicted RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 MRPL4Q9BYD3 311 aaKnown RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 GSX2Q9BZM3 304 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 CSRNP2Q9H175 543 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 NLRC4Q9NPP4 1024 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 LUC7LQ9NQ29 371 aaKnown RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 TRMT13Q9NUP7 481 aaKnown RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 PDP2Q9P2J9 529 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 DMTF1Q9Y222 760 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 STXBP5LQ9Y2K9 1186 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 RABGAP1Q9Y3P9 1069 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 SPTBN4Q9H254 2564 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 MAST4O15021 2626 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 PNPLA7Q6ZV29 1317 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 ITSN1Q15811 1721 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 SSH2Q76I76 1423 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 BTAF1O14981 1849 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 KIF13BQ9NQT8 1826 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 ATP7BP35670 1465 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 LOC102724428A0A0B4J2F2 783 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 A0A1B0GTH6 734 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 SERTM1A2A2V5 107 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 MEIS3P2A8K0S8 358 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 M0R2C6 588 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 AREL1O15033 823 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 FIBPO43427 364 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 CBFA2T2O43439 604 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 SUSD5O60279 629 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 TLR5O60602 858 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 PAPLNO95428 1278 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 CNOT4O95628 575 aaKnown RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 GNRH1P01148 92 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 CD4P01730 458 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 SETSIPP0DME0 302 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 PF4V1P10720 104 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 RLBP1P12271 317 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 RHCEP18577 417 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 TXLNAP40222 546 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 IARSP41252 1262 aaKnown RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 FCGRTP55899 365 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 SIK1P57059 783 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 PCBP4P57723 403 aaKnown RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 RPS26P62854 115 aaKnown RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 RHDQ02161 417 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 NRG1Q02297 640 aaPredicted RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 PTPN11Q06124 597 aaPredicted RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 GRM1Q13255 1194 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 CLN3Q13286 438 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 MPP2Q14168 576 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 TAF11Q15544 211 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 MINDY4Q4G0A6 757 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 SPECC1Q5M775 1068 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 SNAP47Q5SQN1 464 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 INTS11Q5TA45 600 aaKnown RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 PDE12Q6L8Q7 609 aaKnown RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 FAM26EQ8N5C1 309 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 KCT2Q8NC54 265 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 ZNF280CQ8ND82 737 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 JARID2Q92833 1246 aaPredicted RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 OSBP2Q969R2 916 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 L3MBTL2Q969R5 705 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 AIFM3Q96NN9 605 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 ORAI3Q9BRQ5 295 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 MENTQ9BUN1 341 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 WDR12Q9GZL7 423 aaKnown RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 CD248Q9HCU0 757 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 RAB6BQ9NRW1 208 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 RNF181Q9P0P0 153 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 CEP72Q9P209 647 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 FBXO2Q9UK22 296 aaPredicted RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 FBXO10Q9UK96 956 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 LUC7L2Q9Y383 392 aaKnown RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 PARP3Q9Y6F1 533 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 WASHC2AQ641Q2 1341 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 FRMPD2Q68DX3 1309 aaPredicted RBP3.6□□□□□ -1.83
VPS35-209ENST00000568642 COL18A1P39060 1754 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 TRPM7Q96QT4 1865 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 HFM1A2PYH4 1435 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 TNS3Q68CZ2 1445 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 SPATA31E1Q6ZUB1 1445 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 KIAA1107Q9UPP5 1409 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 RIMS2Q9UQ26 1411 aa3.6□□□□□ -1.83
VPS35-209ENST00000568642 CENPFP49454 3210 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms