RNA–Protein interactions for RNA: ENST00000568586.5

RAB40C-211, Transcript of RAB40C, member RAS oncogene family, human

TSL 2

Gene RAB40C, Length 648 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB40C-211	ENST00000568586	CYP46A1	Q9Y6A2	500 aa		33.68	■■■□□ 2.98
RAB40C-211	ENST00000568586	SCG2	P13521	617 aa		33.67	■■■□□ 2.98
RAB40C-211	ENST00000568586	KCNA2	P16389	499 aa		33.67	■■■□□ 2.98
RAB40C-211	ENST00000568586	CHMP4BP1	P59074	171 aa		33.67	■■■□□ 2.98
RAB40C-211	ENST00000568586	PKN1	Q16512	942 aa		33.67	■■■□□ 2.98
RAB40C-211	ENST00000568586	JADE2	Q9NQC1	790 aa		33.67	■■■□□ 2.98
RAB40C-211	ENST00000568586	NOD1	Q9Y239	953 aa		33.67	■■■□□ 2.98
RAB40C-211	ENST00000568586	TMEM265	A0A087WTH1	108 aa		33.66	■■■□□ 2.98
RAB40C-211	ENST00000568586	ESYT2	A0FGR8	921 aa		33.66	■■■□□ 2.98
RAB40C-211	ENST00000568586	LGALS2	P05162	132 aa		33.66	■■■□□ 2.98
RAB40C-211	ENST00000568586	IQCF3	P0C7M6	154 aa		33.66	■■■□□ 2.98
RAB40C-211	ENST00000568586	HOXC8	P31273	242 aa		33.66	■■■□□ 2.98
RAB40C-211	ENST00000568586	AP3B2	Q13367	1082 aa		33.66	■■■□□ 2.98
RAB40C-211	ENST00000568586	ALG1	Q9BT22	464 aa		33.66	■■■□□ 2.98
RAB40C-211	ENST00000568586		H3BRB1	525 aa		33.65	■■■□□ 2.98
RAB40C-211	ENST00000568586	NOP56	O00567	594 aa	Known RBP	33.65	■■■□□ 2.98
RAB40C-211	ENST00000568586	ATP9A	O75110	1047 aa		33.65	■■■□□ 2.98
RAB40C-211	ENST00000568586	IFNAR1	P17181	557 aa		33.65	■■■□□ 2.98
RAB40C-211	ENST00000568586	RETREG2	Q8NC44	543 aa		33.65	■■■□□ 2.98
RAB40C-211	ENST00000568586	DHX38	Q92620	1227 aa	Known RBP	33.65	■■■□□ 2.98
RAB40C-211	ENST00000568586	TUT1	Q9H6E5	874 aa	Known RBP	33.65	■■■□□ 2.98
RAB40C-211	ENST00000568586	ZNF697	Q5TEC3	545 aa		33.64	■■■□□ 2.98
RAB40C-211	ENST00000568586	CCDC155	Q8N6L0	562 aa		33.64	■■■□□ 2.98
RAB40C-211	ENST00000568586	AFAP1L1	Q8TED9	768 aa		33.64	■■■□□ 2.98
RAB40C-211	ENST00000568586	RNF26	Q9BY78	433 aa	Predicted RBP	33.64	■■■□□ 2.98
RAB40C-211	ENST00000568586	ZMYND12	Q9H0C1	365 aa		33.64	■■■□□ 2.98
RAB40C-211	ENST00000568586	MTIF3	Q9H2K0	278 aa	Known RBP	33.64	■■■□□ 2.98
RAB40C-211	ENST00000568586	CXXC1	Q9P0U4	656 aa	Predicted RBP	33.64	■■■□□ 2.98
RAB40C-211	ENST00000568586	PTK7	Q13308	1070 aa		33.63	■■■□□ 2.97
RAB40C-211	ENST00000568586	MTMR1	Q13613	665 aa		33.63	■■■□□ 2.97
RAB40C-211	ENST00000568586	ZNF274	Q96GC6	653 aa	Predicted RBP	33.63	■■■□□ 2.97
RAB40C-211	ENST00000568586	SEMA6B	Q9H3T3	888 aa		33.63	■■■□□ 2.97
RAB40C-211	ENST00000568586	STXBP5L	Q9Y2K9	1186 aa		33.63	■■■□□ 2.97
RAB40C-211	ENST00000568586	TELO2	Q9Y4R8	837 aa		33.63	■■■□□ 2.97
RAB40C-211	ENST00000568586	SREBF1	P36956	1147 aa		33.62	■■■□□ 2.97
RAB40C-211	ENST00000568586	HIC1	Q14526	733 aa		33.62	■■■□□ 2.97
RAB40C-211	ENST00000568586	GUCD1	Q96NT3	240 aa		33.62	■■■□□ 2.97
RAB40C-211	ENST00000568586	MXRA8	Q9BRK3	442 aa		33.62	■■■□□ 2.97
RAB40C-211	ENST00000568586	ANO3	Q9BYT9	981 aa		33.62	■■■□□ 2.97
RAB40C-211	ENST00000568586	TRIM71	Q2Q1W2	868 aa	Known RBP	33.61	■■■□□ 2.97
RAB40C-211	ENST00000568586	OTOP2	Q7RTS6	562 aa		33.61	■■■□□ 2.97
RAB40C-211	ENST00000568586	CCDC12	Q8WUD4	166 aa	Predicted RBP	33.61	■■■□□ 2.97
RAB40C-211	ENST00000568586	CRYGN	Q8WXF5	182 aa		33.61	■■■□□ 2.97
RAB40C-211	ENST00000568586	PHKB	Q93100	1093 aa		33.61	■■■□□ 2.97
RAB40C-211	ENST00000568586	TTYH1	Q9H313	450 aa	Predicted RBP	33.61	■■■□□ 2.97
RAB40C-211	ENST00000568586	CDH23	Q9H251	3354 aa		33.61	■■■□□ 2.97
RAB40C-211	ENST00000568586	ANAPC15	P60006	121 aa		33.6	■■■□□ 2.97
RAB40C-211	ENST00000568586	MCTP2	Q6DN12	878 aa		33.6	■■■□□ 2.97
RAB40C-211	ENST00000568586	IL17RA	Q96F46	866 aa		33.6	■■■□□ 2.97
RAB40C-211	ENST00000568586	UPF3B	Q9BZI7	483 aa	Known RBP	33.6	■■■□□ 2.97
RAB40C-211	ENST00000568586	KCNH7	Q9NS40	1196 aa		33.6	■■■□□ 2.97
RAB40C-211	ENST00000568586	CHD9	Q3L8U1	2897 aa		33.6	■■■□□ 2.97
RAB40C-211	ENST00000568586	TANC1	Q9C0D5	1861 aa		33.59	■■■□□ 2.97
RAB40C-211	ENST00000568586	PARN	O95453	639 aa	Known RBP	33.59	■■■□□ 2.97
RAB40C-211	ENST00000568586	SELP	P16109	830 aa		33.59	■■■□□ 2.97
RAB40C-211	ENST00000568586	GPNMB	Q14956	572 aa		33.59	■■■□□ 2.97
RAB40C-211	ENST00000568586	CEP55	Q53EZ4	464 aa		33.59	■■■□□ 2.97
RAB40C-211	ENST00000568586	NCOA5	Q9HCD5	579 aa	Known RBP	33.59	■■■□□ 2.97
RAB40C-211	ENST00000568586	TMEM260	Q9NX78	707 aa		33.59	■■■□□ 2.97
RAB40C-211	ENST00000568586	DOCK5	Q9H7D0	1870 aa		33.59	■■■□□ 2.97
RAB40C-211	ENST00000568586	MEIS1	O00470	390 aa		33.58	■■■□□ 2.97
RAB40C-211	ENST00000568586	CKB	P12277	381 aa		33.58	■■■□□ 2.97
RAB40C-211	ENST00000568586	DNAJB2	P25686	324 aa		33.58	■■■□□ 2.97
RAB40C-211	ENST00000568586	CCT2	P78371	535 aa	Known RBP	33.58	■■■□□ 2.97
RAB40C-211	ENST00000568586	ZNF200	P98182	395 aa	Predicted RBP	33.58	■■■□□ 2.97
RAB40C-211	ENST00000568586	SERINC5	Q86VE9	423 aa		33.58	■■■□□ 2.97
RAB40C-211	ENST00000568586	CYP2W1	Q8TAV3	490 aa		33.58	■■■□□ 2.97
RAB40C-211	ENST00000568586	PGBD1	Q96JS3	809 aa		33.58	■■■□□ 2.97
RAB40C-211	ENST00000568586	C6orf50	Q9HD87	102 aa		33.58	■■■□□ 2.97
RAB40C-211	ENST00000568586	GSTTP1	A0A1W2PQM5	241 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	SMIM10L2A	P0DMW4	78 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	SMIM10L2B	P0DMW5	78 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	AKAP17A	Q02040	695 aa	Known RBP	33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	TRAF7	Q6Q0C0	670 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	NIPA1	Q7RTP0	329 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	DEFB128	Q7Z7B8	93 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	SEPT1	Q8WYJ6	367 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	PBX4	Q9BYU1	374 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	RNPEP	Q9H4A4	650 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	PDRG1	Q9NUG6	133 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	ZNF215	Q9UL58	517 aa	Predicted RBP	33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	TRIP12	Q14669	1992 aa	Predicted RBP	33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	SCN5A	Q14524	2016 aa		33.57	■■■□□ 2.96
RAB40C-211	ENST00000568586	GRXCR1	A8MXD5	290 aa		33.56	■■■□□ 2.96
RAB40C-211	ENST00000568586	CYP3A4	P08684	503 aa		33.56	■■■□□ 2.96
RAB40C-211	ENST00000568586	GNA11	P29992	359 aa		33.56	■■■□□ 2.96
RAB40C-211	ENST00000568586	LRRC8D	Q7L1W4	858 aa		33.56	■■■□□ 2.96
RAB40C-211	ENST00000568586	WNT8B	Q93098	351 aa		33.56	■■■□□ 2.96
RAB40C-211	ENST00000568586	NFASC	O94856	1347 aa		33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	C17orf102	A2RUQ5	167 aa		33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	ADAMTS3	O15072	1205 aa		33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	CXCL10	P02778	98 aa		33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	TCF7	P36402	384 aa	Predicted RBP	33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	ADAM17	P78536	824 aa		33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	ARHGAP4	P98171	946 aa		33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	TRIM50	Q86XT4	487 aa		33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	SLC26A6	Q9BXS9	759 aa		33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	SH3GLB2	Q9NR46	395 aa		33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	SLC4A7	Q9Y6M7	1214 aa		33.55	■■■□□ 2.96
RAB40C-211	ENST00000568586	EIF5B	O60841	1220 aa	Known RBP	33.54	■■■□□ 2.96

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