RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 LARP1BQ659C4 914 aaKnown RBP24.94■■□□□ 1.58
CLN3-234ENST00000568472 CYFIP1Q7L576 1253 aa24.94■■□□□ 1.58
CLN3-234ENST00000568472 MBOAT7Q96N66 472 aa24.94■■□□□ 1.58
CLN3-234ENST00000568472 TBC1D22BQ9NU19 505 aa24.94■■□□□ 1.58
CLN3-234ENST00000568472 FRMPD3Q5JV73 1810 aa24.93■■□□□ 1.58
CLN3-234ENST00000568472 IPO5O00410 1097 aaKnown RBP24.93■■□□□ 1.58
CLN3-234ENST00000568472 NOP56O00567 594 aaKnown RBP24.93■■□□□ 1.58
CLN3-234ENST00000568472 ATP9AO75110 1047 aa24.93■■□□□ 1.58
CLN3-234ENST00000568472 MMP3P08254 477 aa24.93■■□□□ 1.58
CLN3-234ENST00000568472 HOXD8P13378 290 aaPredicted RBP24.93■■□□□ 1.58
CLN3-234ENST00000568472 PTGS1P23219 599 aa24.93■■□□□ 1.58
CLN3-234ENST00000568472 U2AF2P26368 475 aaKnown RBP eCLIP24.93■■□□□ 1.58
CLN3-234ENST00000568472 IRX5P78411 483 aaPredicted RBP24.93■■□□□ 1.58
CLN3-234ENST00000568472 LETM2Q2VYF4 491 aa24.93■■□□□ 1.58
CLN3-234ENST00000568472 C1orf53Q5VUE5 145 aa24.93■■□□□ 1.58
CLN3-234ENST00000568472 MTG1Q9BT17 334 aaPredicted RBP24.93■■□□□ 1.58
CLN3-234ENST00000568472 STARD7Q9NQZ5 370 aa24.93■■□□□ 1.58
CLN3-234ENST00000568472 EDIL3O43854 480 aa24.92■■□□□ 1.58
CLN3-234ENST00000568472 HSP90AA1P07900 732 aaKnown RBP24.92■■□□□ 1.58
CLN3-234ENST00000568472 PURAQ00577 322 aaKnown RBP24.92■■□□□ 1.58
CLN3-234ENST00000568472 HSDL1Q3SXM5 330 aa24.92■■□□□ 1.58
CLN3-234ENST00000568472 NOSTRINQ8IVI9 506 aa24.92■■□□□ 1.58
CLN3-234ENST00000568472 FERMT2Q96AC1 680 aa24.92■■□□□ 1.58
CLN3-234ENST00000568472 VTI1AQ96AJ9 217 aa24.92■■□□□ 1.58
CLN3-234ENST00000568472 LENG9Q96B70 501 aa24.92■■□□□ 1.58
CLN3-234ENST00000568472 ZNF577Q9BSK1 485 aa24.92■■□□□ 1.58
CLN3-234ENST00000568472 MYL3P08590 195 aa24.91■■□□□ 1.58
CLN3-234ENST00000568472 PDIA4P13667 645 aaKnown RBP24.91■■□□□ 1.58
CLN3-234ENST00000568472 MLLT1Q03111 559 aaPredicted RBP24.91■■□□□ 1.58
CLN3-234ENST00000568472 CXCL17Q6UXB2 119 aa24.91■■□□□ 1.58
CLN3-234ENST00000568472 SLC39A5Q6ZMH5 540 aa24.91■■□□□ 1.58
CLN3-234ENST00000568472 JPH1Q9HDC5 661 aaPredicted RBP24.91■■□□□ 1.58
CLN3-234ENST00000568472 DDX25Q9UHL0 483 aaKnown RBP24.91■■□□□ 1.58
CLN3-234ENST00000568472 CCNT1O60563 726 aaKnown RBP24.9■■□□□ 1.58
CLN3-234ENST00000568472 TRAPPC10P48553 1259 aa24.9■■□□□ 1.58
CLN3-234ENST00000568472 EARS2Q5JPH6 523 aaKnown RBP24.9■■□□□ 1.58
CLN3-234ENST00000568472 SEPT1Q8WYJ6 367 aa24.9■■□□□ 1.58
CLN3-234ENST00000568472 RIT2Q99578 217 aa24.9■■□□□ 1.58
CLN3-234ENST00000568472 GPR20Q99678 358 aa24.9■■□□□ 1.58
CLN3-234ENST00000568472 SLC9A2Q9UBY0 812 aa24.9■■□□□ 1.58
CLN3-234ENST00000568472 TCEAL9Q9UHQ7 104 aa24.9■■□□□ 1.58
CLN3-234ENST00000568472 A0A0U1RQG5 324 aaPredicted RBP24.89■■□□□ 1.58
CLN3-234ENST00000568472 TDP2O95551 362 aa24.89■■□□□ 1.58
CLN3-234ENST00000568472 ITGB3BPQ13352 177 aaPredicted RBP24.89■■□□□ 1.58
CLN3-234ENST00000568472 SNX17Q15036 470 aa24.89■■□□□ 1.58
CLN3-234ENST00000568472 FAM20AQ96MK3 541 aa24.89■■□□□ 1.58
CLN3-234ENST00000568472 KATNAL1Q9BW62 490 aa24.89■■□□□ 1.58
CLN3-234ENST00000568472 PKD2L1Q9P0L9 805 aa24.89■■□□□ 1.58
CLN3-234ENST00000568472 NOL7Q9UMY1 257 aaKnown RBP24.89■■□□□ 1.58
CLN3-234ENST00000568472 TBX3O15119 743 aa24.88■■□□□ 1.57
CLN3-234ENST00000568472 ORC2Q13416 577 aaPredicted RBP24.88■■□□□ 1.57
CLN3-234ENST00000568472 BECN1Q14457 450 aa24.88■■□□□ 1.57
CLN3-234ENST00000568472 MCTP1Q6DN14 999 aa24.88■■□□□ 1.57
CLN3-234ENST00000568472 BCAS3Q9H6U6 928 aa24.88■■□□□ 1.57
CLN3-234ENST00000568472 MROH7Q68CQ1 1323 aa24.87■■□□□ 1.57
CLN3-234ENST00000568472 MSH4O15457 936 aa24.87■■□□□ 1.57
CLN3-234ENST00000568472 DHX15O43143 795 aaKnown RBP24.87■■□□□ 1.57
CLN3-234ENST00000568472 SORBS3O60504 671 aa24.87■■□□□ 1.57
CLN3-234ENST00000568472 KRT76Q01546 638 aa24.87■■□□□ 1.57
CLN3-234ENST00000568472 SLC5A5Q92911 643 aa24.87■■□□□ 1.57
CLN3-234ENST00000568472 FAM205CA6NFA0 338 aa24.86■■□□□ 1.57
CLN3-234ENST00000568472 ARVCFO00192 962 aa24.86■■□□□ 1.57
CLN3-234ENST00000568472 ATN1P54259 1190 aaPredicted RBP24.86■■□□□ 1.57
CLN3-234ENST00000568472 ITGA7Q13683 1181 aa24.86■■□□□ 1.57
CLN3-234ENST00000568472 ZNF746Q6NUN9 644 aaPredicted RBP24.86■■□□□ 1.57
CLN3-234ENST00000568472 SMAP1Q8IYB5 467 aaPredicted RBP24.86■■□□□ 1.57
CLN3-234ENST00000568472 SLC43A3Q8NBI5 491 aa24.86■■□□□ 1.57
CLN3-234ENST00000568472 MYH7BA7E2Y1 1941 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 GAS7O60861 476 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 BAG4O95429 457 aaKnown RBP24.85■■□□□ 1.57
CLN3-234ENST00000568472 F2P00734 622 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 CDK7P50613 346 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 ACTR2P61160 394 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 SP4Q02446 784 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 PTPN11Q06124 597 aaPredicted RBP24.85■■□□□ 1.57
CLN3-234ENST00000568472 LRRC26Q2I0M4 334 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 SLFN12Q8IYM2 578 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 ETNPPLQ8TBG4 499 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 DPF3Q92784 378 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 TOX2Q96NM4 488 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 KCNMB3Q9NPA1 279 aa24.85■■□□□ 1.57
CLN3-234ENST00000568472 ZNF215Q9UL58 517 aaPredicted RBP24.85■■□□□ 1.57
CLN3-234ENST00000568472 GSTTP1A0A1W2PQM5 241 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 MARCH6O60337 910 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 EVI5O60447 810 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 ATG7O95352 703 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 SYT1P21579 422 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 TCF7P36402 384 aaPredicted RBP24.84■■□□□ 1.57
CLN3-234ENST00000568472 LRCH2Q5VUJ6 765 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 NFRKBQ6P4R8 1299 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 ANKRD33Q7Z3H0 272 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 C16orf70Q9BSU1 422 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 TEKT3Q9BXF9 490 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 NR2E3Q9Y5X4 410 aa24.84■■□□□ 1.57
CLN3-234ENST00000568472 KIF28PB7ZC32 967 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 H3BRB1 525 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 SLC37A4O43826 429 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 NEMFO60524 1076 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 LGALS2P05162 132 aa24.83■■□□□ 1.57
CLN3-234ENST00000568472 RTP1P59025 263 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms