RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 CCDC40Q4G0X9 1142 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 WDR93Q6P2C0 686 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 USP17L6PQ6QN14 398 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 ZNF572Q7Z3I7 529 aaPredicted RBP6.92□□□□□ -1.3
CLN3-223ENST00000566472 FAM160B2Q86V87 743 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 SYT2Q8N9I0 419 aaPredicted RBP6.92□□□□□ -1.3
CLN3-223ENST00000566472 TRIM58Q8NG06 486 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 FAM151AQ8WW52 585 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 ATRIPQ8WXE1 791 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 BAP1Q92560 729 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 SECISBP2LQ93073 1101 aaKnown RBP6.92□□□□□ -1.3
CLN3-223ENST00000566472 LENG9Q96B70 501 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 PSMD1Q99460 953 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 KCTD10Q9H3F6 313 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 SH2D4AQ9H788 454 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 ANKZF1Q9H8Y5 726 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 GOPCQ9HD26 462 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 TUFT1Q9NNX1 390 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 AGPAT5Q9NUQ2 364 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 TSKSQ9UJT2 592 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 HDAC9Q9UKV0 1011 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 GUCA1BQ9UMX6 200 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 KIAA1024Q9UPX6 916 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 TRAF3IP3Q9Y228 551 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 TMX2Q9Y320 296 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 RABGAP1Q9Y3P9 1069 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 DAAM1Q9Y4D1 1078 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 SAR1BQ9Y6B6 198 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 UBE4BO95155 1302 aa6.92□□□□□ -1.3
CLN3-223ENST00000566472 POTEB3A0JP26 581 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 POTECB2RU33 542 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 E9PMD0 336 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 TRAF5O00463 557 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 PDXKO00764 312 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 MAP2K7O14733 419 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 CETN3O15182 167 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 SLC16A3O15427 465 aaKnown RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 PPIP5K2O43314 1243 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 CALUO43852 315 aaPredicted RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 TBC1D12O60347 775 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 MED24O75448 989 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 EIF3JO75822 258 aaKnown RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 GDF11O95390 407 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 EYA4O95677 639 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 GH2P01242 217 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 KRT18P05783 430 aaKnown RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 KLK7P49862 253 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 STAT2P52630 851 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 KIF11P52732 1056 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 CACNB3P54284 484 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 GPS2Q13227 327 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 TERF2Q15554 542 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 SLC15A2Q16348 729 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 NFIL3Q16649 462 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 AOC3Q16853 763 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 LONRF2Q1L5Z9 754 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 HERC4Q5GLZ8 1057 aaPredicted RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 RSBN1LQ6PCB5 846 aaPredicted RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 POTEBQ6S5H4 581 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 EPM2AIP1Q7L775 607 aaPredicted RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 HDXQ7Z353 690 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 CACNA2D4Q7Z3S7 1137 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 FRMD5Q7Z6J6 570 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 TRIM59Q8IWR1 403 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 RTKN2Q8IZC4 609 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 RNF10Q8N5U6 811 aaKnown RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 MTMR14Q8NCE2 650 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 CHURC1Q8WUH1 139 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 SCFD1Q8WVM8 642 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 HPS3Q969F9 1004 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 ALS2CR12Q96Q35 445 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 DEFB129Q9H1M3 183 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 RANBP17Q9H2T7 1088 aaKnown RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 ACBD3Q9H3P7 528 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 DEF6Q9H4E7 631 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 TDRD3Q9H7E2 651 aaKnown RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 MMRN2Q9H8L6 949 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 METTL14Q9HCE5 456 aaKnown RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 KCNQ5Q9NR82 932 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 PUF60Q9UHX1 559 aaKnown RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 VAV3Q9UKW4 847 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 PRR12Q9ULL5 1215 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 DNM3Q9UQ16 869 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 JRKLQ9Y4A0 524 aa6.91□□□□□ -1.3
CLN3-223ENST00000566472 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.91□□□□□ -1.3
CLN3-223ENST00000566472 BAZ2BQ9UIF8 2168 aaKnown RBP6.91□□□□□ -1.3
CLN3-223ENST00000566472 PSME4Q14997 1843 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 MYH4Q9Y623 1939 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 GTPBP10A4D1E9 387 aaKnown RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 SPDYE2BA6NHP3 402 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 LRRC53A6NM62 1247 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 FAM196BA6NMK8 535 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 GCOM1H8Y6P7 765 aaPredicted RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 EIF3DO15371 548 aaKnown RBP eCLIP6.9□□□□□ -1.3
CLN3-223ENST00000566472 MSH4O15457 936 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 TBCAO75347 108 aaKnown RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 ATP1A1P05023 1023 aaKnown RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 SERPING1P05155 500 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 SSBP05455 408 aaKnown RBP eCLIP6.9□□□□□ -1.3
CLN3-223ENST00000566472 VIL1P09327 827 aaKnown RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms