RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CABP7Q86V35 215 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 CAGE1Q8TC20 777 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 AFAP1L1Q8TED9 768 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 ZBTB9Q96C00 473 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 C7orf25Q9BPX7 421 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 NOC4LQ9BVI4 516 aaKnown RBP14.67□□□□□ -0.06
VPS4A-204ENST00000566354 STXBP3O00186 592 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 PLCG1P19174 1290 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 AMPD3Q01432 767 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 COBLL1Q53SF7 1204 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 FKBP15Q5T1M5 1219 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 CCNI2Q6ZMN8 369 aaPredicted RBP14.67□□□□□ -0.06
VPS4A-204ENST00000566354 HEATR3Q7Z4Q2 680 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 FAM83AQ86UY5 434 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 PCMTD1Q96MG8 357 aaPredicted RBP14.67□□□□□ -0.06
VPS4A-204ENST00000566354 LZTS2Q9BRK4 669 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 TRIM34Q9BYJ4 488 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 JADE2Q9NQC1 790 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 HACL1Q9UJ83 578 aa14.67□□□□□ -0.06
VPS4A-204ENST00000566354 MPHOSPH10O00566 681 aaKnown RBP14.66□□□□□ -0.06
VPS4A-204ENST00000566354 PRPF6O94906 941 aaKnown RBP14.66□□□□□ -0.06
VPS4A-204ENST00000566354 HNRNPH3P31942 346 aaKnown RBP14.66□□□□□ -0.06
VPS4A-204ENST00000566354 RASA3Q14644 834 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 MIIPQ5JXC2 388 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 CCDC42Q96M95 316 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 TMEM47Q9BQJ4 181 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 CRACR2AQ9BSW2 395 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 JRKLQ9Y4A0 524 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 USO1O60763 962 aaKnown RBP14.66□□□□□ -0.06
VPS4A-204ENST00000566354 OR52Z1P0C646 297 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 KLK7P49862 253 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 ASIC1P78348 528 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 STK4Q13043 487 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 RRP1BQ14684 758 aaKnown RBP14.66□□□□□ -0.06
VPS4A-204ENST00000566354 TATDN1Q6P1N9 297 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 CNNM4Q6P4Q7 775 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 LRRC31Q6UY01 552 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 TRIM58Q8NG06 486 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 LRRC15Q8TF66 581 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 PGAP2Q9UHJ9 254 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 PLAGL2Q9UPG8 496 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 MTMR7Q9Y216 660 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 DUSP10Q9Y6W6 482 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 PLIN4Q96Q06 1357 aa14.66□□□□□ -0.06
VPS4A-204ENST00000566354 ZC3H4Q9UPT8 1303 aaKnown RBP14.65□□□□□ -0.06
VPS4A-204ENST00000566354 PDE2AO00408 941 aaPredicted RBP14.65□□□□□ -0.06
VPS4A-204ENST00000566354 CYTH3O43739 400 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 GDF11O95390 407 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 PRLRP16471 622 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 HIRAP54198 1017 aaPredicted RBP14.65□□□□□ -0.06
VPS4A-204ENST00000566354 CYP27A1Q02318 531 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 ITIH3Q06033 890 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 MAPK8IP2Q13387 824 aaPredicted RBP14.65□□□□□ -0.06
VPS4A-204ENST00000566354 CERKLQ49MI3 558 aaPredicted RBP14.65□□□□□ -0.06
VPS4A-204ENST00000566354 MIGA2Q7L4E1 593 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 KRT25Q7Z3Z0 450 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 C10orf67Q8IYJ2 551 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 RUBCNQ92622 972 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 NCAPGQ9BPX3 1015 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 ZMYND12Q9H0C1 365 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 MTMR4Q9NYA4 1195 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 GREB1LQ9C091 1923 aaPredicted RBP14.65□□□□□ -0.06
VPS4A-204ENST00000566354 IGKV6D-41A0A0C4DH26 115 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 MACROD2A1Z1Q3 448 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 PALM3A6NDB9 673 aaPredicted RBP14.65□□□□□ -0.06
VPS4A-204ENST00000566354 ZNF185O15231 689 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 JAG1P78504 1218 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 SLC35G1Q2M3R5 365 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 MMGT1Q8N4V1 131 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 EEF2KMTQ96G04 330 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 SELENOOQ9BVL4 669 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.65□□□□□ -0.06
VPS4A-204ENST00000566354 SNX12Q9UMY4 172 aa14.65□□□□□ -0.06
VPS4A-204ENST00000566354 POLR2AP24928 1970 aaKnown RBP14.64□□□□□ -0.07
VPS4A-204ENST00000566354 TRIM66O15016 1216 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 TACC1O75410 805 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 NONOQ15233 471 aaKnown RBP eCLIP14.64□□□□□ -0.07
VPS4A-204ENST00000566354 CCDC96Q2M329 555 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 ANGEL2Q5VTE6 544 aaKnown RBP14.64□□□□□ -0.07
VPS4A-204ENST00000566354 ZNF572Q7Z3I7 529 aaPredicted RBP14.64□□□□□ -0.07
VPS4A-204ENST00000566354 BANK1Q8NDB2 785 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 FAM184BQ9ULE4 1060 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 ZMYND10O75800 440 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 NOVP48745 357 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 TNNI2P48788 182 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 CENPPQ6IPU0 288 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 CREG2Q8IUH2 290 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 CCDC17Q96LX7 622 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 TEPSINQ96N21 525 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 IFIH1Q9BYX4 1025 aaKnown RBP14.64□□□□□ -0.07
VPS4A-204ENST00000566354 LRWD1Q9UFC0 647 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 HERC5Q9UII4 1024 aaKnown RBP14.64□□□□□ -0.07
VPS4A-204ENST00000566354 CEP83Q9Y592 693 aa14.64□□□□□ -0.07
VPS4A-204ENST00000566354 ZNF263O14978 683 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 CCNT1O60563 726 aaKnown RBP14.63□□□□□ -0.07
VPS4A-204ENST00000566354 PPFIA4O75335 1185 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 FCER1AP12319 257 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 GNA11P29992 359 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 GGCXP38435 758 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 TNFAIP1Q13829 316 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms