RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 FANCBQ8NB91 859 aa17.15■□□□□ 0.34
CLN3-222ENST00000566083 IL27Q8NEV9 243 aa17.15■□□□□ 0.34
CLN3-222ENST00000566083 ATP6V0A1Q93050 837 aa17.15■□□□□ 0.34
CLN3-222ENST00000566083 GPRASP2Q96D09 838 aa17.15■□□□□ 0.34
CLN3-222ENST00000566083 PRRC2BQ5JSZ5 2229 aaKnown RBP17.15■□□□□ 0.34
CLN3-222ENST00000566083 NBNO60934 754 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 LGR5O75473 907 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 HOXC8P31273 242 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 GPNMBQ14956 572 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 TRIM71Q2Q1W2 868 aaKnown RBP17.14■□□□□ 0.33
CLN3-222ENST00000566083 ZNF618Q5T7W0 954 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 USP17L6PQ6QN14 398 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 CYFIP1Q7L576 1253 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 SRBD1Q8N5C6 995 aaKnown RBP17.14■□□□□ 0.33
CLN3-222ENST00000566083 MYL10Q9BUA6 226 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 EHMT1Q9H9B1 1298 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 RTEL1Q9NZ71 1219 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 PRUNE2Q8WUY3 3088 aa17.14■□□□□ 0.33
CLN3-222ENST00000566083 SPDYE3A6NKU9 549 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 RSPH10B2B2RC85 870 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 RSPH10BP0C881 870 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 SMIM10L2AP0DMW4 78 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 SMIM10L2BP0DMW5 78 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 THPOP40225 353 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 TAP1Q03518 808 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 CCDC85BQ15834 202 aaPredicted RBP17.13■□□□□ 0.33
CLN3-222ENST00000566083 ASB2Q96Q27 587 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 RAD9AQ99638 391 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 GPR20Q99678 358 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 RBM28Q9NW13 759 aaKnown RBP17.13■□□□□ 0.33
CLN3-222ENST00000566083 SORBS3O60504 671 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 GJB5O95377 273 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 PLEKHA8P1O95397 391 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 KRT32Q14532 448 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 GPKOWQ92917 476 aaPredicted RBP eCLIP17.13■□□□□ 0.33
CLN3-222ENST00000566083 ZFP91Q96JP5 570 aaPredicted RBP17.13■□□□□ 0.33
CLN3-222ENST00000566083 NEK1Q96PY6 1258 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 RNPEPQ9H4A4 650 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 LMCD1Q9NZU5 365 aa17.13■□□□□ 0.33
CLN3-222ENST00000566083 EYSQ5T1H1 3165 aa17.12■□□□□ 0.33
CLN3-222ENST00000566083 CHD9Q3L8U1 2897 aa17.12■□□□□ 0.33
CLN3-222ENST00000566083 hCG_1984214I3L0E3 225 aa17.12■□□□□ 0.33
CLN3-222ENST00000566083 HMGB1P09429 215 aaKnown RBP17.12■□□□□ 0.33
CLN3-222ENST00000566083 ZNF200P98182 395 aaPredicted RBP17.12■□□□□ 0.33
CLN3-222ENST00000566083 TSGA10IPQ3SY00 556 aa17.12■□□□□ 0.33
CLN3-222ENST00000566083 TRAF7Q6Q0C0 670 aa17.12■□□□□ 0.33
CLN3-222ENST00000566083 TMTC3Q6ZXV5 915 aa17.12■□□□□ 0.33
CLN3-222ENST00000566083 ZNF713Q8N859 430 aaPredicted RBP17.12■□□□□ 0.33
CLN3-222ENST00000566083 ARNTL2Q8WYA1 636 aa17.12■□□□□ 0.33
CLN3-222ENST00000566083 TNPO1Q92973 898 aaKnown RBP17.12■□□□□ 0.33
CLN3-222ENST00000566083 GLT8D2Q9H1C3 349 aa17.12■□□□□ 0.33
CLN3-222ENST00000566083 NRCAMQ92823 1304 aa17.12■□□□□ 0.33
CLN3-222ENST00000566083 AMHP03971 560 aa17.11■□□□□ 0.33
CLN3-222ENST00000566083 RPLP2P05387 115 aaKnown RBP17.11■□□□□ 0.33
CLN3-222ENST00000566083 SEMA3FQ13275 785 aa17.11■□□□□ 0.33
CLN3-222ENST00000566083 MICU3Q86XE3 530 aa17.11■□□□□ 0.33
CLN3-222ENST00000566083 SEPT8Q92599 483 aa17.11■□□□□ 0.33
CLN3-222ENST00000566083 COG5Q9UP83 839 aa17.11■□□□□ 0.33
CLN3-222ENST00000566083 INSL6Q9Y581 213 aa17.11■□□□□ 0.33
CLN3-222ENST00000566083 MTCH2Q9Y6C9 303 aa17.11■□□□□ 0.33
CLN3-222ENST00000566083 KAT6AQ92794 2004 aa17.1■□□□□ 0.33
CLN3-222ENST00000566083 FOSP01100 380 aaPredicted RBP17.1■□□□□ 0.33
CLN3-222ENST00000566083 RCAN1P53805 252 aa17.1■□□□□ 0.33
CLN3-222ENST00000566083 MTMR1Q13613 665 aa17.1■□□□□ 0.33
CLN3-222ENST00000566083 PLEKHG4Q58EX7 1191 aa17.1■□□□□ 0.33
CLN3-222ENST00000566083 PPP1R18Q6NYC8 613 aa17.1■□□□□ 0.33
CLN3-222ENST00000566083 TAF2Q6P1X5 1199 aa17.1■□□□□ 0.33
CLN3-222ENST00000566083 DHX32Q7L7V1 743 aaKnown RBP17.1■□□□□ 0.33
CLN3-222ENST00000566083 MICALL1Q8N3F8 863 aa17.1■□□□□ 0.33
CLN3-222ENST00000566083 SEPT1Q8WYJ6 367 aa17.1■□□□□ 0.33
CLN3-222ENST00000566083 APBB2Q92870 758 aa17.1■□□□□ 0.33
CLN3-222ENST00000566083 PRDM6Q9NQX0 595 aa17.1■□□□□ 0.33
CLN3-222ENST00000566083 TNFRSF10AO00220 468 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 TREHO43280 583 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 RXRAP19793 462 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 DEFB103AP81534 67 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 MBTPS1Q14703 1052 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 SKIV2LQ15477 1246 aaKnown RBP17.09■□□□□ 0.33
CLN3-222ENST00000566083 UTP14CQ5TAP6 766 aaKnown RBP17.09■□□□□ 0.33
CLN3-222ENST00000566083 APOA5Q6Q788 366 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 HEATR3Q7Z4Q2 680 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 RPAINQ86UA6 219 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 RSPH3Q86UC2 560 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 CMTR1Q8N1G2 835 aaKnown RBP17.09■□□□□ 0.33
CLN3-222ENST00000566083 CCDC82Q8N4S0 544 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 DBF4BQ8NFT6 615 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 WNT8BQ93098 351 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 TGS1Q96RS0 853 aaKnown RBP17.09■□□□□ 0.33
CLN3-222ENST00000566083 CERS4Q9HA82 394 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 SETD4Q9NVD3 440 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 ERAP1Q9NZ08 941 aa17.09■□□□□ 0.33
CLN3-222ENST00000566083 VCANP13611 3396 aa17.08■□□□□ 0.33
CLN3-222ENST00000566083 ZBTB43O43298 467 aa17.08■□□□□ 0.32
CLN3-222ENST00000566083 CDC45O75419 566 aa17.08■□□□□ 0.32
CLN3-222ENST00000566083 TCF7P36402 384 aaPredicted RBP17.08■□□□□ 0.32
CLN3-222ENST00000566083 HIC1Q14526 733 aa17.08■□□□□ 0.32
CLN3-222ENST00000566083 LRRC2Q9BYS8 371 aa17.08■□□□□ 0.32
CLN3-222ENST00000566083 SMARCAD1Q9H4L7 1026 aa17.08■□□□□ 0.32
CLN3-222ENST00000566083 BCAS3Q9H6U6 928 aa17.08■□□□□ 0.32
CLN3-222ENST00000566083 JADE2Q9NQC1 790 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms