RNA–Protein interactions for RNA: ENST00000565559.5

CAPN3-215, Transcript of calpain 3, humanhuman

TSL 3

Gene CAPN3, Length 711 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-215ENST00000565559 CALML3P27482 149 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 GTF2F1P35269 517 aaKnown RBP eCLIP13.15□□□□□ -0.3
CAPN3-215ENST00000565559 BMPR1AP36894 532 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 RRP1P56182 461 aaKnown RBP13.15□□□□□ -0.3
CAPN3-215ENST00000565559 SNAP25P60880 206 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 LSM11P83369 360 aaKnown RBP eCLIP13.15□□□□□ -0.3
CAPN3-215ENST00000565559 COASYQ13057 564 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 UBE3CQ15386 1083 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 PTPN21Q16825 1174 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 TRAF7Q6Q0C0 670 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 FRMD5Q7Z6J6 570 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 RIPOR3Q96MK2 946 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 PAG1Q9NWQ8 432 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 HDAC6Q9UBN7 1215 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 PRR12Q9ULL5 1215 aa13.15□□□□□ -0.3
CAPN3-215ENST00000565559 DCHS1Q96JQ0 3298 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 GH1P01241 217 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 TSPY3P0CV98 308 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 TSPY8P0CW00 308 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 MCCP23508 829 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 THPOP40225 353 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 DGKDQ16760 1214 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 TRIM71Q2Q1W2 868 aaKnown RBP13.14□□□□□ -0.31
CAPN3-215ENST00000565559 SLFNL1Q499Z3 407 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 PLEKHG4Q58EX7 1191 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 DHX37Q8IY37 1157 aaKnown RBP13.14□□□□□ -0.31
CAPN3-215ENST00000565559 PANK1Q8TE04 598 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 KAT2BQ92831 832 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 ALG1Q9BT22 464 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 C1orf115Q9H7X2 142 aa13.14□□□□□ -0.31
CAPN3-215ENST00000565559 USP15Q9Y4E8 981 aaPredicted RBP13.14□□□□□ -0.31
CAPN3-215ENST00000565559 NCOR2Q9Y618 2525 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 PRDM1O75626 825 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 RGS20O76081 388 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 MMP1P03956 469 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 HSP90AB4PQ58FF6 505 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 RCSD1Q6JBY9 416 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 ZSCAN25Q6NSZ9 544 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 RNF207Q6ZRF8 634 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 KCTD1Q719H9 257 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 CHST3Q7LGC8 479 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 ITPRIPQ8IWB1 547 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 EFHBQ8N7U6 833 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 DNERQ8NFT8 737 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 CHMP4CQ96CF2 233 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 MYO7AQ13402 2215 aa13.13□□□□□ -0.31
CAPN3-215ENST00000565559 MICAL3Q7RTP6 2002 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 NFIBO00712 420 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 PDGFBP01127 241 aaPredicted RBP13.12□□□□□ -0.31
CAPN3-215ENST00000565559 IFIT2P09913 472 aaKnown RBP13.12□□□□□ -0.31
CAPN3-215ENST00000565559 ATF7P17544 494 aaPredicted RBP13.12□□□□□ -0.31
CAPN3-215ENST00000565559 EDNRBP24530 442 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 KIAA0753Q2KHM9 967 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 GIMAP6Q6P9H5 292 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 SLC30A10Q6XR72 485 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 CLASRPQ8N2M8 674 aaKnown RBP13.12□□□□□ -0.31
CAPN3-215ENST00000565559 PLVAPQ9BX97 442 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 CHMP4BQ9H444 224 aaKnown RBP13.12□□□□□ -0.31
CAPN3-215ENST00000565559 IL1RAPL2Q9NP60 686 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 CLEC1BQ9P126 229 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 PNMA2Q9UL42 364 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 DDX19BQ9UMR2 479 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 EXOC6BQ9Y2D4 811 aa13.12□□□□□ -0.31
CAPN3-215ENST00000565559 ARIH2O95376 493 aa13.11□□□□□ -0.31
CAPN3-215ENST00000565559 NEDD1Q8NHV4 660 aa13.11□□□□□ -0.31
CAPN3-215ENST00000565559 APBB2Q92870 758 aa13.11□□□□□ -0.31
CAPN3-215ENST00000565559 WNT8BQ93098 351 aa13.11□□□□□ -0.31
CAPN3-215ENST00000565559 RMDN1Q96DB5 314 aa13.11□□□□□ -0.31
CAPN3-215ENST00000565559 CNTNAP3BQ96NU0 1288 aa13.11□□□□□ -0.31
CAPN3-215ENST00000565559 CNTNAP3Q9BZ76 1288 aa13.11□□□□□ -0.31
CAPN3-215ENST00000565559 ADGRA3Q8IWK6 1321 aa13.11□□□□□ -0.31
CAPN3-215ENST00000565559 PLIN4Q96Q06 1357 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 MYH4Q9Y623 1939 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 F2P00734 622 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 TDO2P48775 406 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 ARHGAP1Q07960 439 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 MTMR3Q13615 1198 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 PUM1Q14671 1186 aaKnown RBP eCLIP13.1□□□□□ -0.31
CAPN3-215ENST00000565559 CCDC96Q2M329 555 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 UBALD2Q8IYN6 164 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 TMEM105Q8N8V8 129 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 RHPN1Q8TCX5 695 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 PUS7LQ9H0K6 701 aaKnown RBP13.1□□□□□ -0.31
CAPN3-215ENST00000565559 RANBP17Q9H2T7 1088 aaKnown RBP13.1□□□□□ -0.31
CAPN3-215ENST00000565559 BARX2Q9UMQ3 279 aaPredicted RBP13.1□□□□□ -0.31
CAPN3-215ENST00000565559 STX8Q9UNK0 236 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 TPRP12270 2363 aaKnown RBP13.1□□□□□ -0.31
CAPN3-215ENST00000565559 DMDP11532 3685 aa13.1□□□□□ -0.31
CAPN3-215ENST00000565559 KMT2BQ9UMN6 2715 aaPredicted RBP13.09□□□□□ -0.31
CAPN3-215ENST00000565559 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.09□□□□□ -0.31
CAPN3-215ENST00000565559 CAND2O75155 1236 aa13.09□□□□□ -0.31
CAPN3-215ENST00000565559 SLC3A2P08195 630 aaKnown RBP13.09□□□□□ -0.31
CAPN3-215ENST00000565559 NRIP1P48552 1158 aa13.09□□□□□ -0.31
CAPN3-215ENST00000565559 RPS6P62753 249 aaKnown RBP13.09□□□□□ -0.31
CAPN3-215ENST00000565559 ZNF200P98182 395 aaPredicted RBP13.09□□□□□ -0.31
CAPN3-215ENST00000565559 BTG3Q14201 252 aaPredicted RBP13.09□□□□□ -0.31
CAPN3-215ENST00000565559 LY6KQ17RY6 165 aa13.09□□□□□ -0.31
CAPN3-215ENST00000565559 RALGAPA2Q2PPJ7 1873 aa13.09□□□□□ -0.31
CAPN3-215ENST00000565559 CCDC62Q6P9F0 684 aa13.09□□□□□ -0.31
CAPN3-215ENST00000565559 SEPT14Q6ZU15 432 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms