RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HIPK3Q9H422 1215 aa19.71■□□□□ 0.75
CLN3-217ENST00000565354 PCDHA6Q9UN73 950 aa19.71■□□□□ 0.75
CLN3-217ENST00000565354 PCDHA8Q9Y5H6 950 aa19.71■□□□□ 0.75
CLN3-217ENST00000565354 PRRC2BQ5JSZ5 2229 aaKnown RBP19.71■□□□□ 0.75
CLN3-217ENST00000565354 JAK2O60674 1132 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 EIF3JO75822 258 aaKnown RBP19.7■□□□□ 0.74
CLN3-217ENST00000565354 BEX3Q00994 111 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 AP3B2Q13367 1082 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 TRIM29Q14134 588 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 JAKMIP3Q5VZ66 844 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 MCTP2Q6DN12 878 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 IQSEC1Q6DN90 963 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 SEPT14Q6ZU15 432 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 OTOP2Q7RTS6 562 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 REXO1Q8N1G1 1221 aaKnown RBP19.7■□□□□ 0.74
CLN3-217ENST00000565354 AIFM3Q96NN9 605 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 LLPHQ9BRT6 129 aaKnown RBP19.7■□□□□ 0.74
CLN3-217ENST00000565354 PDGFCQ9NRA1 345 aa19.7■□□□□ 0.74
CLN3-217ENST00000565354 HMGN5P82970 282 aaKnown RBP19.69■□□□□ 0.74
CLN3-217ENST00000565354 ST3GAL1Q11201 340 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 TTLL4Q14679 1199 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 TAPT1Q6NXT6 567 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 CXCL17Q6UXB2 119 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 FAM177A1Q8N128 213 aaPredicted RBP19.69■□□□□ 0.74
CLN3-217ENST00000565354 FAM184AQ8NB25 1140 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 IL31RAQ8NI17 732 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 SCFD2Q8WU76 684 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 TMX3Q96JJ7 454 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 PGBD1Q96JS3 809 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 ANO3Q9BYT9 981 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 TMEM260Q9NX78 707 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 UMODL1Q5DID0 1318 aa19.69■□□□□ 0.74
CLN3-217ENST00000565354 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.68■□□□□ 0.74
CLN3-217ENST00000565354 STAM2O75886 525 aa19.68■□□□□ 0.74
CLN3-217ENST00000565354 CABYRO75952 493 aa19.68■□□□□ 0.74
CLN3-217ENST00000565354 CD2BP2O95400 341 aaKnown RBP19.68■□□□□ 0.74
CLN3-217ENST00000565354 FOSBP53539 338 aa19.68■□□□□ 0.74
CLN3-217ENST00000565354 GNPTABQ3T906 1256 aa19.68■□□□□ 0.74
CLN3-217ENST00000565354 VSIG10LQ86VR7 867 aa19.68■□□□□ 0.74
CLN3-217ENST00000565354 NECAB3Q96P71 396 aaPredicted RBP19.68■□□□□ 0.74
CLN3-217ENST00000565354 WDR11Q9BZH6 1224 aa19.68■□□□□ 0.74
CLN3-217ENST00000565354 AP5M1Q9H0R1 490 aa19.68■□□□□ 0.74
CLN3-217ENST00000565354 PCDHA4Q9UN74 947 aa19.68■□□□□ 0.74
CLN3-217ENST00000565354 MRVI1Q9Y6F6 885 aa19.68■□□□□ 0.74
CLN3-217ENST00000565354 FRMPD4Q14CM0 1322 aa19.68■□□□□ 0.74
CLN3-217ENST00000565354 BMP1P13497 986 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 RABGGTBP53611 331 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 CCL23P55773 120 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 ITGA7Q13683 1181 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 PCNX4Q63HM2 1172 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 PPP2R2DQ66LE6 453 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 GALNT17Q6IS24 598 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 XRRA1Q6P2D8 792 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 BLIDQ8IZY5 108 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 ZFP91Q96JP5 570 aaPredicted RBP19.67■□□□□ 0.74
CLN3-217ENST00000565354 NOC4LQ9BVI4 516 aaKnown RBP19.67■□□□□ 0.74
CLN3-217ENST00000565354 C1QTNF1Q9BXJ1 281 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 SEZ6LQ9BYH1 1024 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 BRMS1Q9HCU9 246 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 RTEL1Q9NZ71 1219 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 KCNJ14Q9UNX9 436 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 PCDHA11Q9Y5I1 949 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 SLC4A7Q9Y6M7 1214 aa19.67■□□□□ 0.74
CLN3-217ENST00000565354 NKRFO15226 690 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLN3-217ENST00000565354 TXNP10599 105 aaKnown RBP19.66■□□□□ 0.74
CLN3-217ENST00000565354 FDPSP14324 419 aaKnown RBP19.66■□□□□ 0.74
CLN3-217ENST00000565354 SMPD1P17405 629 aa19.66■□□□□ 0.74
CLN3-217ENST00000565354 ZNF76P36508 570 aa19.66■□□□□ 0.74
CLN3-217ENST00000565354 CLK2P49760 499 aaKnown RBP19.66■□□□□ 0.74
CLN3-217ENST00000565354 FSCN1Q16658 493 aaKnown RBP19.66■□□□□ 0.74
CLN3-217ENST00000565354 TLK2Q86UE8 772 aa19.66■□□□□ 0.74
CLN3-217ENST00000565354 NLRX1Q86UT6 975 aa19.66■□□□□ 0.74
CLN3-217ENST00000565354 MICALL1Q8N3F8 863 aa19.66■□□□□ 0.74
CLN3-217ENST00000565354 GNEQ9Y223 722 aaKnown RBP19.66■□□□□ 0.74
CLN3-217ENST00000565354 KIF3AQ9Y496 699 aa19.66■□□□□ 0.74
CLN3-217ENST00000565354 GRIN2DO15399 1336 aa19.66■□□□□ 0.74
CLN3-217ENST00000565354 RBM47A0AV96 593 aaKnown RBP19.65■□□□□ 0.74
CLN3-217ENST00000565354 DYNC1LI2O43237 492 aaPredicted RBP19.65■□□□□ 0.74
CLN3-217ENST00000565354 TFF2Q03403 129 aa19.65■□□□□ 0.74
CLN3-217ENST00000565354 AAK1Q2M2I8 961 aa19.65■□□□□ 0.74
CLN3-217ENST00000565354 DUSP28Q4G0W2 176 aa19.65■□□□□ 0.74
CLN3-217ENST00000565354 KCNV1Q6PIU1 500 aa19.65■□□□□ 0.74
CLN3-217ENST00000565354 RPUSD2Q8IZ73 545 aaKnown RBP19.65■□□□□ 0.74
CLN3-217ENST00000565354 OR6J1Q8NGC5 347 aa19.65■□□□□ 0.74
CLN3-217ENST00000565354 RASGRP4Q8TDF6 673 aa19.65■□□□□ 0.74
CLN3-217ENST00000565354 TRPV6Q9H1D0 765 aa19.65■□□□□ 0.74
CLN3-217ENST00000565354 WNT8AQ9H1J5 351 aa19.65■□□□□ 0.74
CLN3-217ENST00000565354 B4GALT4O60513 344 aa19.64■□□□□ 0.73
CLN3-217ENST00000565354 MYOGP15173 224 aa19.64■□□□□ 0.73
CLN3-217ENST00000565354 MRPS9P82933 396 aaKnown RBP19.64■□□□□ 0.73
CLN3-217ENST00000565354 DAGLBQ8NCG7 672 aa19.64■□□□□ 0.73
CLN3-217ENST00000565354 PHF20Q9BVI0 1012 aa19.64■□□□□ 0.73
CLN3-217ENST00000565354 Q9Y3F1 56 aa19.64■□□□□ 0.73
CLN3-217ENST00000565354 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.64■□□□□ 0.73
CLN3-217ENST00000565354 KIAA1217Q5T5P2 1943 aa19.63■□□□□ 0.73
CLN3-217ENST00000565354 ZEB2O60315 1214 aa19.63■□□□□ 0.73
CLN3-217ENST00000565354 ATP2A2P16615 1042 aaKnown RBP19.63■□□□□ 0.73
CLN3-217ENST00000565354 KRT2P35908 639 aa19.63■□□□□ 0.73
CLN3-217ENST00000565354 SREBF1P36956 1147 aa19.63■□□□□ 0.73
CLN3-217ENST00000565354 BRDTQ58F21 947 aaPredicted RBP19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms