RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	COL2A1	P02458	1487 aa	Predicted RBP	12.22	□□□□□ -0.45
TCF4-222	ENST00000564228	PDE2A	O00408	941 aa	Predicted RBP	12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	MPHOSPH10	O00566	681 aa	Known RBP	12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	AKR1B1	P15121	316 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	PAX7	P23759	505 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	RNF187	Q5TA31	235 aa	Predicted RBP	12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	FKBP1C	Q5VVH2	108 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	PPP4R3A	Q6IN85	833 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	DPY19L2	Q6NUT2	758 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	CYB5D1	Q6P9G0	228 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	FAM83A	Q86UY5	434 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	CDAN1	Q8IWY9	1227 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	MREG	Q8N565	214 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	RRP36	Q96EU6	259 aa	Known RBP	12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	AIFM3	Q96NN9	605 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	STX8	Q9UNK0	236 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	GREB1L	Q9C091	1923 aa	Predicted RBP	12.21	□□□□□ -0.45
TCF4-222	ENST00000564228	NID2	Q14112	1375 aa		12.21	□□□□□ -0.45
TCF4-222	ENST00000564228		A0A1W2PQC6	194 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	GOLGA8A	A7E2F4	631 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	SRGAP2	O75044	1071 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	CYLC1	P35663	651 aa	Predicted RBP	12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	NT5C2	P49902	561 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	C2orf54	Q08AI8	447 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	TNFAIP1	Q13829	316 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	RASA3	Q14644	834 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	GLE1	Q53GS7	698 aa	Known RBP	12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	CCDC121	Q6ZUS5	278 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	ZNF654	Q8IZM8	581 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	FUK	Q8N0W3	1084 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	NEDD1	Q8NHV4	660 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	CCDC114	Q96M63	670 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	CCT8L2	Q96SF2	557 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	CHP1	Q99653	195 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	TSGA10	Q9BZW7	698 aa		12.21	□□□□□ -0.46
TCF4-222	ENST00000564228	ATAD5	Q96QE3	1844 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	HMGB1P1	B2RPK0	211 aa	Predicted RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	RNF225	M0QZC1	329 aa	Predicted RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	MDH1	P40925	334 aa	Known RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	SARNP	P82979	210 aa	Known RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	SAFB	Q15424	915 aa	Known RBP eCLIP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	NTRK3	Q16288	839 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	MEA1	Q16626	185 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	TSR1	Q2NL82	804 aa	Known RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	LACTB2	Q53H82	288 aa	Predicted RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	ANGEL2	Q5VTE6	544 aa	Known RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	TTC19	Q6DKK2	380 aa	Predicted RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	CATIP	Q7Z7H3	387 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	KIAA1328	Q86T90	577 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	GRAMD1C	Q8IYS0	662 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	CCDC170	Q8IYT3	715 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	TSEN2	Q8NCE0	465 aa	Known RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	HOOK2	Q96ED9	719 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	RNPC3	Q96LT9	517 aa	Known RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	ZIM3	Q96PE6	472 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	FOXP1	Q9H334	677 aa	Predicted RBP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	STIM2	Q9P246	746 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	RWDD2A	Q9UIY3	292 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	SNX12	Q9UMY4	172 aa		12.2	□□□□□ -0.46
TCF4-222	ENST00000564228	IDE	P14735	1019 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	NR1D1	P20393	614 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	CCT6A	P40227	531 aa	Known RBP	12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	TOB1	P50616	345 aa	Predicted RBP	12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	STX17	P56962	302 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	DPYD	Q12882	1025 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	CERKL	Q49MI3	558 aa	Predicted RBP	12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	SPECC1	Q5M775	1068 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	KLHL10	Q6JEL2	608 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	MIGA2	Q7L4E1	593 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	CLEC10A	Q8IUN9	316 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	ARFGAP2	Q8N6H7	521 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	CEP95	Q96GE4	821 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	GGA3	Q9NZ52	723 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	CAPN11	Q9UMQ6	739 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	MTMR7	Q9Y216	660 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	ANKRD33B	A6NCL7	494 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	GDF11	O95390	407 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	MMP1	P03956	469 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	HIRA	P54198	1017 aa	Predicted RBP	12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	GRIN1	Q05586	938 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	XRCC4	Q13426	336 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	RTN1	Q16799	776 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	SHROOM1	Q2M3G4	852 aa	Predicted RBP	12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	CCDC178	Q5BJE1	867 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	TCP11X2	Q5H9J9	407 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	CFAP58	Q5T655	872 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	NAIF1	Q69YI7	327 aa	Predicted RBP	12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	ARMC9	Q7Z3E5	817 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	FAM228A	Q86W67	206 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	DGKH	Q86XP1	1220 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	CREG2	Q8IUH2	290 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	IQCK	Q8N0W5	287 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	ARMC2	Q8NEN0	867 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	PAGE5	Q96GU1	130 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	ADARB2	Q9NS39	739 aa	Known RBP	12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	TCP11L1	Q9NUJ3	509 aa		12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	HERC5	Q9UII4	1024 aa	Known RBP	12.19	□□□□□ -0.46
TCF4-222	ENST00000564228	TPX2	Q9ULW0	747 aa	Known RBP	12.19	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms