RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ITGB5P18084 799 aa15.28■□□□□ 0.04
CLK3-213ENST00000563842 SCRN1Q12765 414 aa15.28■□□□□ 0.04
CLK3-213ENST00000563842 LRIT3Q3SXY7 679 aa15.28■□□□□ 0.04
CLK3-213ENST00000563842 CEP55Q53EZ4 464 aa15.28■□□□□ 0.04
CLK3-213ENST00000563842 GALNT17Q6IS24 598 aa15.28■□□□□ 0.04
CLK3-213ENST00000563842 C7orf31Q8N865 590 aa15.28■□□□□ 0.04
CLK3-213ENST00000563842 KAT2BQ92831 832 aa15.28■□□□□ 0.04
CLK3-213ENST00000563842 C22orf23Q9BZE7 217 aa15.28■□□□□ 0.04
CLK3-213ENST00000563842 UPF2Q9HAU5 1272 aaKnown RBP15.28■□□□□ 0.04
CLK3-213ENST00000563842 VPS54Q9P1Q0 977 aa15.28■□□□□ 0.04
CLK3-213ENST00000563842 TPCN1Q9ULQ1 816 aa15.28■□□□□ 0.04
CLK3-213ENST00000563842 STK36Q9NRP7 1315 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 HAS3O00219 553 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 KCNA2P16389 499 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 ITGB8P26012 769 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 ARHGAP4P98171 946 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 MFSD10Q14728 455 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 KIAA0753Q2KHM9 967 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 NIPA1Q7RTP0 329 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 CCDC155Q8N6L0 562 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 WASF1Q92558 559 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 PGBD1Q96JS3 809 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 ALG1Q9BT22 464 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 PPP1R12CQ9BZL4 782 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 TRMT13Q9NUP7 481 aaKnown RBP15.27■□□□□ 0.04
CLK3-213ENST00000563842 TMEM260Q9NX78 707 aa15.27■□□□□ 0.04
CLK3-213ENST00000563842 ZNF215Q9UL58 517 aaPredicted RBP15.27■□□□□ 0.04
CLK3-213ENST00000563842 RANBP2P49792 3224 aaKnown RBP15.26■□□□□ 0.03
CLK3-213ENST00000563842 H3BRB1 525 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 MEIS1O00470 390 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 PPFIA3O75145 1194 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 CYP3A4P08684 503 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 ZNF286BP0CG31 522 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 BFSP2Q13515 415 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 PTGISQ16647 500 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 RETREG2Q8NC44 543 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 IL27Q8NEV9 243 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 SEPT1Q8WYJ6 367 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 GPR20Q99678 358 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 SDF4Q9BRK5 362 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 C16orf70Q9BSU1 422 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 NOC4LQ9BVI4 516 aaKnown RBP15.26■□□□□ 0.03
CLK3-213ENST00000563842 TUT1Q9H6E5 874 aaKnown RBP15.26■□□□□ 0.03
CLK3-213ENST00000563842 KCNH7Q9NS40 1196 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 GTF2IRD1Q9UHL9 959 aa15.26■□□□□ 0.03
CLK3-213ENST00000563842 WDR81Q562E7 1941 aa15.25■□□□□ 0.03
CLK3-213ENST00000563842 NFASCO94856 1347 aa15.25■□□□□ 0.03
CLK3-213ENST00000563842 ATP9AO75110 1047 aa15.25■□□□□ 0.03
CLK3-213ENST00000563842 LGALS2P05162 132 aa15.25■□□□□ 0.03
CLK3-213ENST00000563842 CYP2C18P33260 490 aa15.25■□□□□ 0.03
CLK3-213ENST00000563842 RPUSD2Q8IZ73 545 aaKnown RBP15.25■□□□□ 0.03
CLK3-213ENST00000563842 CAGE1Q8TC20 777 aa15.25■□□□□ 0.03
CLK3-213ENST00000563842 HDAC6Q9UBN7 1215 aa15.25■□□□□ 0.03
CLK3-213ENST00000563842 PCDHA4Q9UN74 947 aa15.25■□□□□ 0.03
CLK3-213ENST00000563842 TANC1Q9C0D5 1861 aa15.25■□□□□ 0.03
CLK3-213ENST00000563842 SCN5AQ14524 2016 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 PITPNM1O00562 1244 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 GNAT1P11488 350 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 CYP2C9P11712 490 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 CSF2RAP15509 400 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 SETQ01105 290 aaPredicted RBP15.24■□□□□ 0.03
CLK3-213ENST00000563842 SP4Q02446 784 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 SHHQ15465 462 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 GDF6Q6KF10 455 aaPredicted RBP15.24■□□□□ 0.03
CLK3-213ENST00000563842 PSRC1Q6PGN9 363 aaPredicted RBP15.24■□□□□ 0.03
CLK3-213ENST00000563842 PLA2G4DQ86XP0 818 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 BLIDQ8IZY5 108 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 DAGLBQ8NCG7 672 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 GTF3C6Q969F1 213 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 BCAS3Q9H6U6 928 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 JPH1Q9HDC5 661 aaPredicted RBP15.24■□□□□ 0.03
CLK3-213ENST00000563842 IL23AQ9NPF7 189 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 ORC3Q9UBD5 711 aaPredicted RBP15.24■□□□□ 0.03
CLK3-213ENST00000563842 SLC9A2Q9UBY0 812 aa15.24■□□□□ 0.03
CLK3-213ENST00000563842 PFKMP08237 780 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 RFC2P35250 354 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 TCF7P36402 384 aaPredicted RBP15.23■□□□□ 0.03
CLK3-213ENST00000563842 RBM25P49756 843 aaKnown RBP15.23■□□□□ 0.03
CLK3-213ENST00000563842 USP11P51784 963 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 CCL23P55773 120 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 ME3Q16798 604 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 UTP14CQ5TAP6 766 aaKnown RBP15.23■□□□□ 0.03
CLK3-213ENST00000563842 GPR153Q6NV75 609 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 CYP2W1Q8TAV3 490 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 CRYGNQ8WXF5 182 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 TNPO1Q92973 898 aaKnown RBP15.23■□□□□ 0.03
CLK3-213ENST00000563842 RNPC3Q96LT9 517 aaKnown RBP15.23■□□□□ 0.03
CLK3-213ENST00000563842 MTIF3Q9H2K0 278 aaKnown RBP15.23■□□□□ 0.03
CLK3-213ENST00000563842 AGO4Q9HCK5 861 aaKnown RBP15.23■□□□□ 0.03
CLK3-213ENST00000563842 PKD2L1Q9P0L9 805 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 TCEAL9Q9UHQ7 104 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 LIMCH1Q9UPQ0 1083 aa15.23■□□□□ 0.03
CLK3-213ENST00000563842 C17orf102A2RUQ5 167 aa15.22■□□□□ 0.03
CLK3-213ENST00000563842 PARNO95453 639 aaKnown RBP15.22■□□□□ 0.03
CLK3-213ENST00000563842 ARP10275 920 aa15.22■□□□□ 0.03
CLK3-213ENST00000563842 CIITAP33076 1130 aa15.22■□□□□ 0.03
CLK3-213ENST00000563842 PTK7Q13308 1070 aa15.22■□□□□ 0.03
CLK3-213ENST00000563842 RASGRP4Q8TDF6 673 aa15.22■□□□□ 0.03
CLK3-213ENST00000563842 PPP1R13LQ8WUF5 828 aa15.22■□□□□ 0.03
CLK3-213ENST00000563842 ZSCAN31Q96LW9 406 aaPredicted RBP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms