RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 RGL1Q9NZL6 768 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 A0A0G2JMZ2 1700 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 MYMKA6NI61 221 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 BTBD19C9JJ37 291 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 CD44P16070 742 aaKnown RBP23.82■■□□□ 1.4
CLN3-209ENST00000561689 HUNKP57058 714 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 ASIC1P78348 528 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 KMT5BQ4FZB7 885 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 PDLIM2Q96JY6 352 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 RIT2Q99578 217 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 DACH1Q9UI36 760 aa23.82■■□□□ 1.4
CLN3-209ENST00000561689 SLC26A4O43511 780 aa23.81■■□□□ 1.4
CLN3-209ENST00000561689 SSBP05455 408 aaKnown RBP eCLIP23.81■■□□□ 1.4
CLN3-209ENST00000561689 ITGB3BPQ13352 177 aaPredicted RBP23.81■■□□□ 1.4
CLN3-209ENST00000561689 XRRA1Q6P2D8 792 aa23.81■■□□□ 1.4
CLN3-209ENST00000561689 MAF1Q9H063 256 aa23.81■■□□□ 1.4
CLN3-209ENST00000561689 PNMA3Q9UL41 463 aa23.81■■□□□ 1.4
CLN3-209ENST00000561689 SMTNL1A8MU46 457 aa23.8■■□□□ 1.4
CLN3-209ENST00000561689 STK24Q9Y6E0 443 aa23.8■■□□□ 1.4
CLN3-209ENST00000561689 PFASO15067 1338 aa23.8■■□□□ 1.4
CLN3-209ENST00000561689 DHX15O43143 795 aaKnown RBP23.8■■□□□ 1.4
CLN3-209ENST00000561689 SLC25A27O95847 323 aa23.8■■□□□ 1.4
CLN3-209ENST00000561689 PSMC6P62333 389 aa23.8■■□□□ 1.4
CLN3-209ENST00000561689 MYL5Q02045 173 aa23.8■■□□□ 1.4
CLN3-209ENST00000561689 KLHL10Q6JEL2 608 aa23.8■■□□□ 1.4
CLN3-209ENST00000561689 DYMQ7RTS9 669 aa23.8■■□□□ 1.4
CLN3-209ENST00000561689 SMCR8Q8TEV9 937 aaPredicted RBP23.8■■□□□ 1.4
CLN3-209ENST00000561689 HSD17B14Q9BPX1 270 aa23.8■■□□□ 1.4
CLN3-209ENST00000561689 ASTN1O14525 1302 aa23.79■■□□□ 1.4
CLN3-209ENST00000561689 IKBKBO14920 756 aa23.79■■□□□ 1.4
CLN3-209ENST00000561689 ATP9AO75110 1047 aa23.79■■□□□ 1.4
CLN3-209ENST00000561689 PLA2G4BP0C869 781 aa23.79■■□□□ 1.4
CLN3-209ENST00000561689 ZBTB48P10074 688 aaPredicted RBP23.79■■□□□ 1.4
CLN3-209ENST00000561689 CTTNQ14247 550 aaKnown RBP23.79■■□□□ 1.4
CLN3-209ENST00000561689 KCNB1Q14721 858 aa23.79■■□□□ 1.4
CLN3-209ENST00000561689 ZNF658Q5TYW1 1059 aaPredicted RBP23.79■■□□□ 1.4
CLN3-209ENST00000561689 B3GNT9Q6UX72 402 aa23.79■■□□□ 1.4
CLN3-209ENST00000561689 TRMT44Q8IYL2 757 aaKnown RBP23.79■■□□□ 1.4
CLN3-209ENST00000561689 POLR3CQ9BUI4 534 aaPredicted RBP23.79■■□□□ 1.4
CLN3-209ENST00000561689 GDAQ9Y2T3 454 aa23.79■■□□□ 1.4
CLN3-209ENST00000561689 PPP1R3GB7ZBB8 358 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 DYDC2Q96IM9 177 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 SLITRK3O94933 977 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 ERVK-9P63128 1117 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 ERVK-24P63145 666 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 FSTL1Q12841 308 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 TPH2Q8IWU9 490 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 FAM43AQ8N2R8 423 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 DDX12PQ92771 950 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 MED15Q96RN5 788 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 DNM3Q9UQ16 869 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 MAPK8IP1Q9UQF2 711 aa23.78■■□□□ 1.4
CLN3-209ENST00000561689 POTEB2H3BUK9 544 aa23.77■■□□□ 1.4
CLN3-209ENST00000561689 RGS20O76081 388 aa23.77■■□□□ 1.4
CLN3-209ENST00000561689 RHOBTB3O94955 611 aa23.77■■□□□ 1.4
CLN3-209ENST00000561689 WDR78Q5VTH9 848 aa23.77■■□□□ 1.4
CLN3-209ENST00000561689 DNERQ8NFT8 737 aa23.77■■□□□ 1.4
CLN3-209ENST00000561689 INPP4AQ96PE3 977 aaPredicted RBP23.77■■□□□ 1.4
CLN3-209ENST00000561689 PTPN18Q99952 460 aa23.77■■□□□ 1.4
CLN3-209ENST00000561689 TRIM5Q9C035 493 aa23.77■■□□□ 1.4
CLN3-209ENST00000561689 HSD3B7Q9H2F3 369 aa23.77■■□□□ 1.4
CLN3-209ENST00000561689 ANKRD23Q86SG2 305 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 NLRX1Q86UT6 975 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 LRRC27Q9C0I9 530 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 TBC1D22BQ9NU19 505 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 EXOC1Q9NV70 894 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 SLC45A1Q9Y2W3 748 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 PGK2P07205 417 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 ERCC5P28715 1186 aaPredicted RBP23.76■■□□□ 1.39
CLN3-209ENST00000561689 STX17P56962 302 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 PDE4DQ08499 809 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 SEMA3FQ13275 785 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 EPHA7Q15375 998 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 ANKRD13CQ8N6S4 541 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 GPRASP2Q96D09 838 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 IWS1Q96ST2 819 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 TUFT1Q9NNX1 390 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 FANCLQ9NW38 375 aa23.76■■□□□ 1.39
CLN3-209ENST00000561689 SOWAHBA6NEL2 793 aa23.75■■□□□ 1.39
CLN3-209ENST00000561689 COPB2P35606 906 aa23.75■■□□□ 1.39
CLN3-209ENST00000561689 ALDH5A1P51649 535 aaPredicted RBP23.75■■□□□ 1.39
CLN3-209ENST00000561689 ZNF157P51786 506 aaPredicted RBP23.75■■□□□ 1.39
CLN3-209ENST00000561689 SLC12A3P55017 1021 aa23.75■■□□□ 1.39
CLN3-209ENST00000561689 TPM4P67936 248 aa23.75■■□□□ 1.39
CLN3-209ENST00000561689 MIER3Q7Z3K6 550 aa23.75■■□□□ 1.39
CLN3-209ENST00000561689 ENOX1Q8TC92 643 aaKnown RBP23.75■■□□□ 1.39
CLN3-209ENST00000561689 HPS3Q969F9 1004 aa23.75■■□□□ 1.39
CLN3-209ENST00000561689 CCDC47Q96A33 483 aaKnown RBP23.75■■□□□ 1.39
CLN3-209ENST00000561689 PORCNQ9H237 461 aa23.75■■□□□ 1.39
CLN3-209ENST00000561689 COBLO75128 1261 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 IDEP14735 1019 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 PRCPP42785 496 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 GPBP1Q86WP2 473 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 GIMAP8Q8ND71 665 aaPredicted RBP23.74■■□□□ 1.39
CLN3-209ENST00000561689 GPRC5AQ8NFJ5 357 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 WRAP73Q9P2S5 460 aaPredicted RBP23.74■■□□□ 1.39
CLN3-209ENST00000561689 CTNND2Q9UQB3 1225 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 NPHP3-ACAD11A0A0J9YXS1 232 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 FCER1AP12319 257 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 STXBP2Q15833 593 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms