RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 RBM12Q9NTZ6 932 aaKnown RBP12.49□□□□□ -0.41
CUX1-218ENST00000560541 CCDC88AQ3V6T2 1871 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 MYO1FO00160 1098 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 CCT5P48643 541 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 UBE2SQ16763 222 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 UNC13DQ70J99 1090 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 PACSIN2Q9UNF0 486 aaPredicted RBP12.48□□□□□ -0.41
CUX1-218ENST00000560541 HYOU1Q9Y4L1 999 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 RREB1Q92766 1687 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 PPFIA4O75335 1185 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 ECM1Q16610 540 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 HAUS3Q68CZ6 603 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 NELFCDQ8IXH7 590 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 BAP1Q92560 729 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 TATDN2Q93075 761 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 LZTS2Q9BRK4 669 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 RTFDC1Q9BY42 306 aaPredicted RBP12.48□□□□□ -0.41
CUX1-218ENST00000560541 GPCPD1Q9NPB8 672 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 CAPN7Q9Y6W3 813 aa12.48□□□□□ -0.41
CUX1-218ENST00000560541 COL16A1Q07092 1604 aaPredicted RBP12.47□□□□□ -0.41
CUX1-218ENST00000560541 FTCDO95954 541 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 GCFC2P16383 781 aaKnown RBP12.47□□□□□ -0.41
CUX1-218ENST00000560541 PPARDQ03181 441 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 LRRC55Q6ZSA7 311 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 MMGT1Q8N4V1 131 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 ZNF483Q8TF39 744 aaPredicted RBP12.47□□□□□ -0.41
CUX1-218ENST00000560541 TLR10Q9BXR5 811 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 FGFBP2Q9BYJ0 223 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 SNED1Q8TER0 1413 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 ROBO3Q96MS0 1386 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 IRS2Q9Y4H2 1338 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 TRAF5O00463 557 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 ECEL1O95672 775 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 HNRNPH3P31942 346 aaKnown RBP12.47□□□□□ -0.41
CUX1-218ENST00000560541 NAA25Q14CX7 972 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 PTPROQ16827 1216 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 FAM98CQ17RN3 349 aaKnown RBP12.47□□□□□ -0.41
CUX1-218ENST00000560541 KCTD16Q68DU8 428 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 C8orf74Q6P047 294 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 ARL8AQ96BM9 186 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 MTMR9Q96QG7 549 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 STIM2Q9P246 746 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 NARFQ9UHQ1 456 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 ROBO1Q9Y6N7 1651 aa12.47□□□□□ -0.41
CUX1-218ENST00000560541 ENO4A6NNW6 628 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 PAFAH1B1P43034 410 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 ADCY2Q08462 1091 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 KCNMA1Q12791 1236 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 TMEM266Q2M3C6 531 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 CCDC40Q4G0X9 1142 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 FAM182BQ5T319 152 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 DNAJC14Q6Y2X3 702 aaPredicted RBP12.46□□□□□ -0.41
CUX1-218ENST00000560541 CCDC84Q86UT8 332 aaPredicted RBP12.46□□□□□ -0.41
CUX1-218ENST00000560541 CEP57Q86XR8 500 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 IFT81Q8WYA0 676 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 PAIP2Q9BPZ3 127 aaKnown RBP12.46□□□□□ -0.41
CUX1-218ENST00000560541 STRCQ7RTU9 1775 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 C21orf2O43822 256 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 EDIL3O43854 480 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 TCP1P17987 556 aaKnown RBP12.46□□□□□ -0.41
CUX1-218ENST00000560541 PPP1R2P41236 205 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 POLR2FP61218 127 aaKnown RBP12.46□□□□□ -0.41
CUX1-218ENST00000560541 GSTO1P78417 241 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 PICALMQ13492 652 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 KRT79Q5XKE5 535 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 PDXDC1Q6P996 788 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 GUF1Q8N442 669 aaKnown RBP12.46□□□□□ -0.41
CUX1-218ENST00000560541 SH2D3CQ8N5H7 860 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 RAD54LQ92698 747 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.46□□□□□ -0.41
CUX1-218ENST00000560541 MCM8Q9UJA3 840 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 FAM169AQ9Y6X4 670 aa12.46□□□□□ -0.41
CUX1-218ENST00000560541 MARCH6O60337 910 aa12.46□□□□□ -0.42
CUX1-218ENST00000560541 IRAK1P51617 712 aa12.46□□□□□ -0.42
CUX1-218ENST00000560541 KLHDC7AQ5VTJ3 777 aa12.46□□□□□ -0.42
CUX1-218ENST00000560541 C16orf86Q6ZW13 317 aa12.46□□□□□ -0.42
CUX1-218ENST00000560541 DNAAF5Q86Y56 855 aa12.46□□□□□ -0.42
CUX1-218ENST00000560541 NEDD1Q8NHV4 660 aa12.46□□□□□ -0.42
CUX1-218ENST00000560541 NOX5Q96PH1 765 aa12.46□□□□□ -0.42
CUX1-218ENST00000560541 RUFY1Q96T51 708 aa12.46□□□□□ -0.42
CUX1-218ENST00000560541 NPHP3-ACAD11A0A0J9YXS1 232 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 KRT14P02533 472 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 ADCY7P51828 1080 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 GNGT1P63211 74 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 HGSNATQ68CP4 663 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 ZKSCAN4Q969J2 545 aaPredicted RBP12.45□□□□□ -0.42
CUX1-218ENST00000560541 LSM14BQ9BX40 385 aaKnown RBP12.45□□□□□ -0.42
CUX1-218ENST00000560541 ZHX3Q9H4I2 956 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 ZNF287Q9HBT7 754 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 TLR2O60603 784 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 PALMO75781 387 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 GLI1P08151 1106 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 PDHBP11177 359 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 INPP5BP32019 993 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 CARSP49589 748 aaKnown RBP12.45□□□□□ -0.42
CUX1-218ENST00000560541 ATP1A2P50993 1020 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 GUCY2FP51841 1108 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 PPP4CP60510 307 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 MYOCDQ8IZQ8 938 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 CCDC26Q8TAB7 109 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms