RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 DEFB129Q9H1M3 183 aa10.79□□□□□ -0.68
RTF1-206ENST00000560447 MRPL44Q9H9J2 332 aaKnown RBP10.79□□□□□ -0.68
RTF1-206ENST00000560447 GOPCQ9HD26 462 aa10.79□□□□□ -0.68
RTF1-206ENST00000560447 MAPK8IP1Q9UQF2 711 aa10.79□□□□□ -0.68
RTF1-206ENST00000560447 TMX2Q9Y320 296 aa10.79□□□□□ -0.68
RTF1-206ENST00000560447 EPN1Q9Y6I3 576 aaPredicted RBP10.79□□□□□ -0.68
RTF1-206ENST00000560447 RBBP6Q7Z6E9 1792 aaKnown RBP10.79□□□□□ -0.68
RTF1-206ENST00000560447 EIF3CLB5ME19 914 aaKnown RBP10.78□□□□□ -0.68
RTF1-206ENST00000560447 IPO7O95373 1038 aaKnown RBP10.78□□□□□ -0.68
RTF1-206ENST00000560447 FCER1AP12319 257 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 RPA1P27694 616 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 FAM193AP78312 1265 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 FKBP3Q00688 224 aaKnown RBP10.78□□□□□ -0.68
RTF1-206ENST00000560447 MAP3K10Q02779 954 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 TCP10Q12799 353 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 EDRF1Q3B7T1 1238 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 VWA3BQ502W6 1294 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 ZCWPW2Q504Y3 356 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 MIIPQ5JXC2 388 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 FAM26FQ5R3K3 315 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 MSL1Q68DK7 614 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 SAMD3Q8N6K7 520 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 ETNPPLQ8TBG4 499 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 CPLX3Q8WVH0 158 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 RABGGTAQ92696 567 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 CSRNP1Q96S65 589 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 EIF3CQ99613 913 aaKnown RBP10.78□□□□□ -0.68
RTF1-206ENST00000560447 POLR3CQ9BUI4 534 aaPredicted RBP10.78□□□□□ -0.68
RTF1-206ENST00000560447 TSGA10Q9BZW7 698 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 SEMA6BQ9H3T3 888 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 TDRD3Q9H7E2 651 aaKnown RBP10.78□□□□□ -0.68
RTF1-206ENST00000560447 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.78□□□□□ -0.68
RTF1-206ENST00000560447 KCNQ5Q9NR82 932 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 DDX41Q9UJV9 622 aaKnown RBP10.78□□□□□ -0.68
RTF1-206ENST00000560447 CDC23Q9UJX2 597 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 PNMA2Q9UL42 364 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 FAM184BQ9ULE4 1060 aa10.78□□□□□ -0.68
RTF1-206ENST00000560447 CTAGE9A4FU28 777 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 YDJCA8MPS7 323 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 GH2P01242 217 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 PLA2G4BP0C869 781 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 TRIM21P19474 475 aaKnown RBP10.77□□□□□ -0.69
RTF1-206ENST00000560447 CHRNA5P30532 468 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 STAT2P52630 851 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 COASYQ13057 564 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 MTF1Q14872 753 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 DLGAP5Q15398 846 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 ELF2Q15723 593 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 PTPN21Q16825 1174 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 WHAMMP3Q1A5X7 153 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 LRRC55Q6ZSA7 311 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 RSRC2Q7L4I2 434 aaKnown RBP10.77□□□□□ -0.69
RTF1-206ENST00000560447 SMAP1Q8IYB5 467 aaPredicted RBP10.77□□□□□ -0.69
RTF1-206ENST00000560447 OGFOD1Q8N543 542 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 SYN2Q92777 582 aaPredicted RBP10.77□□□□□ -0.69
RTF1-206ENST00000560447 GOLGA1Q92805 767 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 PRMT6Q96LA8 375 aaPredicted RBP10.77□□□□□ -0.69
RTF1-206ENST00000560447 WDR24Q96S15 920 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 NAPGQ99747 312 aaPredicted RBP10.77□□□□□ -0.69
RTF1-206ENST00000560447 DESI2Q9BSY9 194 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 NDST4Q9H3R1 872 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 SLC39A2Q9NP94 309 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 PANK4Q9NVE7 773 aa10.77□□□□□ -0.69
RTF1-206ENST00000560447 ZNF70Q9UC06 446 aaPredicted RBP10.77□□□□□ -0.69
RTF1-206ENST00000560447 B4DLN1 442 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 USP17L15C9J2P7 530 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 USP17L13C9JLJ4 530 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 USP17L11C9JVI0 530 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 USP17L18D6R9N7 530 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 USP17L22D6RA61 530 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 USP17L17D6RBQ6 530 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 USP17L19D6RCP7 530 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 USP17L20D6RJB6 530 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 KRT86O43790 486 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 LCA5LO95447 670 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 IDEP14735 1019 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 PBX2P40425 430 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 CACNB3P54284 484 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 SPIRE1Q08AE8 756 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 USP17L24Q0WX57 530 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 BMS1Q14692 1282 aaKnown RBP10.76□□□□□ -0.69
RTF1-206ENST00000560447 KIF4BQ2VIQ3 1234 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 USP17L6PQ6QN14 398 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 SRGAP1Q7Z6B7 1085 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 CREBRFQ8IUR6 639 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 SYT2Q8N9I0 419 aaPredicted RBP10.76□□□□□ -0.69
RTF1-206ENST00000560447 RPGRIP1Q96KN7 1286 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 CARD6Q9BX69 1037 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 RANBP17Q9H2T7 1088 aaKnown RBP10.76□□□□□ -0.69
RTF1-206ENST00000560447 TUFT1Q9NNX1 390 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 FAM53CQ9NYF3 392 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 MAP3K20Q9NYL2 800 aaKnown RBP10.76□□□□□ -0.69
RTF1-206ENST00000560447 PRR12Q9ULL5 1215 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 PLAGL2Q9UPG8 496 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 SIK3Q9Y2K2 1263 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 MRPL11Q9Y3B7 192 aaKnown RBP10.76□□□□□ -0.69
RTF1-206ENST00000560447 COL4A3BPQ9Y5P4 624 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 FER1L6Q2WGJ9 1857 aa10.76□□□□□ -0.69
RTF1-206ENST00000560447 BRCA1P38398 1863 aaKnown RBP10.75□□□□□ -0.69
RTF1-206ENST00000560447 ANO9A1A5B4 782 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms