RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 PPP2R5CQ13362 524 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 PNOCQ13519 176 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 POSTNQ15063 836 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 GNPTABQ3T906 1256 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 SASS6Q6UVJ0 657 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 C17orf99Q6UX52 265 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 GPR142Q7Z601 462 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 SH3RF1Q7Z6J0 888 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 ABRAQ8N0Z2 381 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 ERMNQ8TAM6 284 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 PAGE5Q96GU1 130 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 CDK5RAP3Q96JB5 506 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 FGD4Q96M96 766 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 PNMA5Q96PV4 448 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 MPHOSPH6Q99547 160 aaKnown RBP12.61□□□□□ -0.39
USP3-218ENST00000560202 CUEDC2Q9H467 287 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 PKD2L1Q9P0L9 805 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 STK24Q9Y6E0 443 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 IVNS1ABPQ9Y6Y0 642 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 KDM3AQ9Y4C1 1321 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 EML1O00423 815 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 DHX15O43143 795 aaKnown RBP12.6□□□□□ -0.39
USP3-218ENST00000560202 CCDC192P0DO97 292 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 ADORA2AP29274 412 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 CCT6AP40227 531 aaKnown RBP12.6□□□□□ -0.39
USP3-218ENST00000560202 AFMP43652 599 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 TERF1P54274 439 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 PDE4DQ08499 809 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 ITGB3BPQ13352 177 aaPredicted RBP12.6□□□□□ -0.39
USP3-218ENST00000560202 HYIQ5T013 277 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 HAUS3Q68CZ6 603 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 B3GNT9Q6UX72 402 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 GRAMD1CQ8IYS0 662 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 LRRC15Q8TF66 581 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 CDHR1Q96JP9 859 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 CAPNS2Q96L46 248 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 ZMYND15Q9H091 742 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 UNC45AQ9H3U1 944 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 TSPY26PQ9H489 355 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 TBC1D22BQ9NU19 505 aa12.6□□□□□ -0.39
USP3-218ENST00000560202 LOC102724159A0A0B4J2E5 919 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 SPATA31C2B4DYI2 1134 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 CHMP2AO43633 222 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 ATP9AO75110 1047 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 PRR29P0C7W0 189 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 TYRO3Q06418 890 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 SEMA3FQ13275 785 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 CRHR2Q13324 411 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 PWP2Q15269 919 aaKnown RBP12.59□□□□□ -0.39
USP3-218ENST00000560202 ECM1Q16610 540 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 ZNF792Q3KQV3 632 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 TMEM119Q4V9L6 283 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 PLEKHH3Q7Z736 793 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 NT5C3AQ9H0P0 336 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 MAGEF1Q9HAY2 307 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 STK17AQ9UEE5 414 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 TUBE1Q9UJT0 475 aa12.59□□□□□ -0.39
USP3-218ENST00000560202 LCTP09848 1927 aa12.58□□□□□ -0.39
USP3-218ENST00000560202 DDX39AO00148 427 aaKnown RBP12.58□□□□□ -0.4
USP3-218ENST00000560202 CA12O43570 354 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 AOC2O75106 756 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 COBLO75128 1261 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 MED24O75448 989 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 ALDH1A1P00352 501 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 RPA1P27694 616 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 ICAM3P32942 547 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 GRB14Q14449 540 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 CATSPER3Q86XQ3 398 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 STAMQ92783 540 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 MTRQ99707 1265 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 EIF2AK1Q9BQI3 630 aaKnown RBP12.58□□□□□ -0.4
USP3-218ENST00000560202 KBTBD4Q9NVX7 518 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 PCDHA5Q9Y5H7 936 aa12.58□□□□□ -0.4
USP3-218ENST00000560202 POTEB3A0JP26 581 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 ASB14A6NK59 587 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 SPATA31C1P0DKV0 1188 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 KCNA2P16389 499 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 EPHA7Q15375 998 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 POTEBQ6S5H4 581 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 SEPT14Q6ZU15 432 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 REM2Q8IYK8 340 aaPredicted RBP12.57□□□□□ -0.4
USP3-218ENST00000560202 MORC4Q8TE76 937 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 HSD17B14Q9BPX1 270 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 POLR3CQ9BUI4 534 aaPredicted RBP12.57□□□□□ -0.4
USP3-218ENST00000560202 PDCL3Q9H2J4 239 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 BLOC1S4Q9NUP1 217 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 KIAA1024Q9UPX6 916 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 SLC15A5A6NIM6 579 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 GTPBP6O43824 516 aaPredicted RBP12.57□□□□□ -0.4
USP3-218ENST00000560202 SLITRK3O94933 977 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 SMC2O95347 1197 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 CASP1P29466 404 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 SARSP49591 514 aaKnown RBP12.57□□□□□ -0.4
USP3-218ENST00000560202 KRT76Q01546 638 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 DPYDQ12882 1025 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 NT5DC1Q5TFE4 455 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 MIER3Q7Z3K6 550 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 KCNK18Q7Z418 384 aa12.57□□□□□ -0.4
USP3-218ENST00000560202 ZNF467Q7Z7K2 595 aaPredicted RBP12.57□□□□□ -0.4
USP3-218ENST00000560202 DPP9Q86TI2 863 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms