RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 KRT76Q01546 638 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 SEMA3FQ13275 785 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 LRRC41Q15345 812 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 CALCRLQ16602 461 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 CELF3Q5SZQ8 465 aaKnown RBP11.4□□□□□ -0.58
USP3-216ENST00000559873 LRCH2Q5VUJ6 765 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 MYSM1Q5VVJ2 828 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 CYFIP1Q7L576 1253 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 FERMT3Q86UX7 667 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 PPTC7Q8NI37 304 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 CYP2W1Q8TAV3 490 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 LENG9Q96B70 501 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 FAM20AQ96MK3 541 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 SPATA33Q96N06 139 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 RIT2Q99578 217 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 TEKT3Q9BXF9 490 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 SLC9A2Q9UBY0 812 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 CEP131Q9UPN4 1083 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 ATP6V1DQ9Y5K8 247 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 A6NJR5 290 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 MSH4O15457 936 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 CABYRO75952 493 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 MMP3P08254 477 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 ZSCAN22P10073 491 aaPredicted RBP11.39□□□□□ -0.59
USP3-216ENST00000559873 ARP10275 920 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 JAK3P52333 1124 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 DGKDQ16760 1214 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 TMEM266Q2M3C6 531 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 GNASQ5JWF2 1037 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 GJC2Q5T442 439 aaPredicted RBP11.39□□□□□ -0.59
USP3-216ENST00000559873 POTEDQ86YR6 584 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 SMAP1Q8IYB5 467 aaPredicted RBP11.39□□□□□ -0.59
USP3-216ENST00000559873 AFG1LQ8WV93 481 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 COPS5Q92905 334 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 SLC5A5Q92911 643 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 KATNAL1Q9BW62 490 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 KCNMB3Q9NPA1 279 aa11.39□□□□□ -0.59
USP3-216ENST00000559873 ELP1O95163 1332 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 WDR64B1ANS9 1081 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 SLC37A4O43826 429 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 ATP9AO75110 1047 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 PPFIA4O75335 1185 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 F13A1P00488 732 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 OR52Z1P0C646 297 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 MCM7P33993 719 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 SOX10P56693 466 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 NUCB2P80303 420 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 SP2Q02086 613 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 SP4Q02446 784 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 RESTQ13127 1097 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 ITGB3BPQ13352 177 aaPredicted RBP11.38□□□□□ -0.59
USP3-216ENST00000559873 ZNF746Q6NUN9 644 aaPredicted RBP11.38□□□□□ -0.59
USP3-216ENST00000559873 KLHDC9Q8NEP7 349 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 ETNPPLQ8TBG4 499 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 GLT1D1Q96MS3 346 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 ZNF396Q96N95 335 aaPredicted RBP11.38□□□□□ -0.59
USP3-216ENST00000559873 SEZ6LQ9BYH1 1024 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 RAB34Q9BZG1 259 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 AZI2Q9H6S1 392 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 TSHZ2Q9NRE2 1034 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 ZNF215Q9UL58 517 aaPredicted RBP11.38□□□□□ -0.59
USP3-216ENST00000559873 PHF24Q9UPV7 400 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 CENPFP49454 3210 aa11.38□□□□□ -0.59
USP3-216ENST00000559873 POTEFA5A3E0 1075 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 MYADML2A6NDP7 307 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 DDX39AO00148 427 aaKnown RBP11.37□□□□□ -0.59
USP3-216ENST00000559873 MYL3P08590 195 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 HOXD8P13378 290 aaPredicted RBP11.37□□□□□ -0.59
USP3-216ENST00000559873 SFNP31947 248 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 ACLYP53396 1101 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 BEX3Q00994 111 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 ZNF174Q15697 407 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 HSDL1Q3SXM5 330 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 FAM160B1Q5W0V3 765 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 MIS18BP1Q6P0N0 1132 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 NECAB2Q7Z6G3 386 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 RDM1Q8NG50 284 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 SEPT1Q8WYJ6 367 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 GPR20Q99678 358 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 MTG1Q9BT17 334 aaPredicted RBP11.37□□□□□ -0.59
USP3-216ENST00000559873 STARD7Q9NQZ5 370 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.37□□□□□ -0.59
USP3-216ENST00000559873 CIZ1Q9ULV3 898 aaPredicted RBP11.37□□□□□ -0.59
USP3-216ENST00000559873 RBM19Q9Y4C8 960 aaKnown RBP11.37□□□□□ -0.59
USP3-216ENST00000559873 SAMM50Q9Y512 469 aa11.37□□□□□ -0.59
USP3-216ENST00000559873 EMSYQ7Z589 1322 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 BACH1O14867 736 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 CTAGE5O15320 804 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 CHMP2AO43633 222 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 EDIL3O43854 480 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 SORBS3O60504 671 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 PSMD10O75832 226 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 BRD1O95696 1058 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 ASGR1P07306 291 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 PSAPP07602 524 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 TCF7P36402 384 aaPredicted RBP11.36□□□□□ -0.59
USP3-216ENST00000559873 PRPHP41219 470 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 ACTR2P61160 394 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 KCNA10Q16322 511 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 TMEM63BQ5T3F8 832 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms