RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 IER2Q9BTL4 223 aa7.47□□□□□ -1.21
VPS13C-208ENST00000559119 JAM3Q9BX67 310 aa7.47□□□□□ -1.21
VPS13C-208ENST00000559119 BARX1Q9HBU1 254 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-208ENST00000559119 SLC6A20Q9NP91 592 aa7.47□□□□□ -1.21
VPS13C-208ENST00000559119 GPR27Q9NS67 375 aa7.47□□□□□ -1.21
VPS13C-208ENST00000559119 PPP4R1LQ9P1A2 415 aa7.47□□□□□ -1.21
VPS13C-208ENST00000559119 ASH2LQ9UBL3 628 aa7.47□□□□□ -1.21
VPS13C-208ENST00000559119 PPP2CBP62714 309 aa7.46□□□□□ -1.22
VPS13C-208ENST00000559119 PPP2CAP67775 309 aa7.46□□□□□ -1.22
VPS13C-208ENST00000559119 ARID5AQ03989 594 aa7.46□□□□□ -1.22
VPS13C-208ENST00000559119 USP53Q70EK8 1073 aa7.46□□□□□ -1.22
VPS13C-208ENST00000559119 KLHL36Q8N4N3 616 aa7.46□□□□□ -1.22
VPS13C-208ENST00000559119 PIP4K2CQ8TBX8 421 aa7.46□□□□□ -1.22
VPS13C-208ENST00000559119 MBD6Q96DN6 1003 aa7.46□□□□□ -1.22
VPS13C-208ENST00000559119 ZDHHC9Q9Y397 364 aa7.46□□□□□ -1.22
VPS13C-208ENST00000559119 A0A1W2PQU0 124 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 SLC27A2O14975 620 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 CAPNS1P04632 268 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 FGRP09769 529 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 VASNQ6EMK4 673 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 PKN3Q6P5Z2 889 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 CIR1Q86X95 450 aaPredicted RBP7.45□□□□□ -1.22
VPS13C-208ENST00000559119 IGDCC4Q8TDY8 1250 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 PHF20Q9BVI0 1012 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 CDIP1Q9H305 208 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 ST7Q9NRC1 585 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 HSPBP1Q9NZL4 362 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 WASF3Q9UPY6 502 aa7.45□□□□□ -1.22
VPS13C-208ENST00000559119 B4GALT4O60513 344 aa7.44□□□□□ -1.22
VPS13C-208ENST00000559119 MSCO60682 206 aa7.44□□□□□ -1.22
VPS13C-208ENST00000559119 GRIN1Q05586 938 aa7.44□□□□□ -1.22
VPS13C-208ENST00000559119 NFATC3Q12968 1075 aa7.44□□□□□ -1.22
VPS13C-208ENST00000559119 HSP90AA2PQ14568 343 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-208ENST00000559119 RSPO2Q6UXX9 243 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-208ENST00000559119 TTLL11Q8NHH1 800 aa7.44□□□□□ -1.22
VPS13C-208ENST00000559119 SH3RF3Q8TEJ3 882 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-208ENST00000559119 RBPJLQ9UBG7 517 aa7.44□□□□□ -1.22
VPS13C-208ENST00000559119 AKAP8O43823 692 aaKnown RBP7.43□□□□□ -1.22
VPS13C-208ENST00000559119 DLX3O60479 287 aa7.43□□□□□ -1.22
VPS13C-208ENST00000559119 TCF3P15923 654 aa7.43□□□□□ -1.22
VPS13C-208ENST00000559119 EPHB4P54760 987 aa7.43□□□□□ -1.22
VPS13C-208ENST00000559119 ICAM4Q14773 271 aa7.43□□□□□ -1.22
VPS13C-208ENST00000559119 HNRNPLLQ8WVV9 542 aaKnown RBP7.43□□□□□ -1.22
VPS13C-208ENST00000559119 CDK5RAP1Q96SZ6 601 aaKnown RBP7.43□□□□□ -1.22
VPS13C-208ENST00000559119 DEF6Q9H4E7 631 aa7.43□□□□□ -1.22
VPS13C-208ENST00000559119 DLL4Q9NR61 685 aa7.43□□□□□ -1.22
VPS13C-208ENST00000559119 PPARGC1AQ9UBK2 798 aaKnown RBP7.43□□□□□ -1.22
VPS13C-208ENST00000559119 SRRDQ9UH36 339 aa7.43□□□□□ -1.22
VPS13C-208ENST00000559119 TSC22D4Q9Y3Q8 395 aa7.43□□□□□ -1.22
VPS13C-208ENST00000559119 NUB1Q9Y5A7 615 aa7.43□□□□□ -1.22
VPS13C-208ENST00000559119 FSHBP01225 129 aa7.42□□□□□ -1.22
VPS13C-208ENST00000559119 DNAJA1P31689 397 aaKnown RBP7.42□□□□□ -1.22
VPS13C-208ENST00000559119 SPIRE1Q08AE8 756 aa7.42□□□□□ -1.22
VPS13C-208ENST00000559119 SLFN13Q68D06 897 aa7.42□□□□□ -1.22
VPS13C-208ENST00000559119 OTOP3Q7RTS5 596 aa7.42□□□□□ -1.22
VPS13C-208ENST00000559119 CLEC4DQ8WXI8 215 aa7.42□□□□□ -1.22
VPS13C-208ENST00000559119 SGSM3Q96HU1 749 aa7.42□□□□□ -1.22
VPS13C-208ENST00000559119 KLC2Q9H0B6 622 aa7.42□□□□□ -1.22
VPS13C-208ENST00000559119 IQCA1LA6NCM1 817 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 GPR42O15529 346 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 FBXO21O94952 628 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 GNAT1P11488 350 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 GRK2P25098 689 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 GRK3P35626 688 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 DDR2Q16832 855 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 KIZQ2M2Z5 673 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 PHF19Q5T6S3 580 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 ANKS3Q6ZW76 656 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 PROSER1Q86XN7 944 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 MCF2L2Q86YR7 1114 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 CELF2-AS1Q8N7Q2 184 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 DCAF4Q8WV16 495 aa7.41□□□□□ -1.22
VPS13C-208ENST00000559119 AARSD1Q9BTE6 412 aaKnown RBP7.41□□□□□ -1.22
VPS13C-208ENST00000559119 PRODHO43272 600 aa7.4□□□□□ -1.22
VPS13C-208ENST00000559119 TUSC3Q13454 348 aa7.4□□□□□ -1.22
VPS13C-208ENST00000559119 SMAD2Q15796 467 aaKnown RBP7.4□□□□□ -1.22
VPS13C-208ENST00000559119 PAN2Q504Q3 1202 aaKnown RBP7.4□□□□□ -1.22
VPS13C-208ENST00000559119 ZNF585AQ6P3V2 769 aa7.4□□□□□ -1.22
VPS13C-208ENST00000559119 LBX2Q6XYB7 198 aa7.4□□□□□ -1.22
VPS13C-208ENST00000559119 SPRED1Q7Z699 444 aa7.4□□□□□ -1.22
VPS13C-208ENST00000559119 RBM12BQ8IXT5 1001 aaKnown RBP7.4□□□□□ -1.22
VPS13C-208ENST00000559119 DTX3Q8N9I9 347 aa7.4□□□□□ -1.22
VPS13C-208ENST00000559119 SLC16A11Q8NCK7 471 aa7.4□□□□□ -1.22
VPS13C-208ENST00000559119 KCNJ15Q99712 375 aa7.4□□□□□ -1.22
VPS13C-208ENST00000559119 TINF2Q9BSI4 451 aa7.4□□□□□ -1.22
VPS13C-208ENST00000559119 ADAM29Q9UKF5 820 aa7.4□□□□□ -1.22
VPS13C-208ENST00000559119 CHGBP05060 677 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 CKMP06732 381 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 COL6A1P12109 1028 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 COL6A2P12110 1019 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 C6P13671 934 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 FAHP16930 419 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 RALYLQ86SE5 291 aaKnown RBP7.39□□□□□ -1.23
VPS13C-208ENST00000559119 NUDT10Q8NFP7 164 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 UHMK1Q8TAS1 419 aaKnown RBP7.39□□□□□ -1.23
VPS13C-208ENST00000559119 NUDT11Q96G61 164 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 PTPN18Q99952 460 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 ZFYVE21Q9BQ24 234 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 CD248Q9HCU0 757 aa7.39□□□□□ -1.23
VPS13C-208ENST00000559119 TCAF1Q9Y4C2 921 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms