RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 DGKDQ16760 1214 aa15.46■□□□□ 0.07
SHMT2-228ENST00000557302 TRIM60Q495X7 471 aa15.46■□□□□ 0.07
SHMT2-228ENST00000557302 PLA2G4DQ86XP0 818 aa15.46■□□□□ 0.07
SHMT2-228ENST00000557302 C7orf61Q8IZ16 206 aa15.46■□□□□ 0.07
SHMT2-228ENST00000557302 OXER1Q8TDS5 423 aa15.46■□□□□ 0.07
SHMT2-228ENST00000557302 TBCKQ8TEA7 893 aa15.46■□□□□ 0.07
SHMT2-228ENST00000557302 C8orf76Q96K31 380 aa15.46■□□□□ 0.07
SHMT2-228ENST00000557302 ARVCFO00192 962 aa15.45■□□□□ 0.06
SHMT2-228ENST00000557302 ATP9AO75110 1047 aa15.45■□□□□ 0.06
SHMT2-228ENST00000557302 ARP10275 920 aa15.45■□□□□ 0.06
SHMT2-228ENST00000557302 HOXD8P13378 290 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-228ENST00000557302 CIITAP33076 1130 aa15.45■□□□□ 0.06
SHMT2-228ENST00000557302 SAFBQ15424 915 aaKnown RBP eCLIP15.45■□□□□ 0.06
SHMT2-228ENST00000557302 HSDL1Q3SXM5 330 aa15.45■□□□□ 0.06
SHMT2-228ENST00000557302 DIS3L2Q8IYB7 885 aaKnown RBP15.45■□□□□ 0.06
SHMT2-228ENST00000557302 SDF4Q9BRK5 362 aa15.45■□□□□ 0.06
SHMT2-228ENST00000557302 SEZ6LQ9BYH1 1024 aa15.45■□□□□ 0.06
SHMT2-228ENST00000557302 BCAS3Q9H6U6 928 aa15.45■□□□□ 0.06
SHMT2-228ENST00000557302 IGLV3-22A0A075B6J6 115 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 PQBP1O60828 265 aaKnown RBP15.44■□□□□ 0.06
SHMT2-228ENST00000557302 PPFIA4O75335 1185 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 PSMC6P62333 389 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 GUCY1B3Q02153 619 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 SP4Q02446 784 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 TLE2Q04725 743 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 NR5A1Q13285 461 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 ITGA7Q13683 1181 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 INF2Q27J81 1249 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 PRR16Q569H4 304 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 PIK3AP1Q6ZUJ8 805 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 AGO4Q9HCK5 861 aaKnown RBP15.44■□□□□ 0.06
SHMT2-228ENST00000557302 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-228ENST00000557302 CEP290O15078 2479 aa15.44■□□□□ 0.06
SHMT2-228ENST00000557302 NFASCO94856 1347 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 MROH7Q68CQ1 1323 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 BTBD18B2RXH4 712 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 EDIL3O43854 480 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 ITGB3BPQ13352 177 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-228ENST00000557302 NEK8Q86SG6 692 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 SLC43A3Q8NBI5 491 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 FBXO18Q8NFZ0 1043 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 GPR20Q99678 358 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 ZNF577Q9BSK1 485 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 JPH1Q9HDC5 661 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-228ENST00000557302 SLC9A2Q9UBY0 812 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 SMC3Q9UQE7 1217 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 GRIN2DO15399 1336 aa15.43■□□□□ 0.06
SHMT2-228ENST00000557302 CYP3A7-CYP3A51PA0A087WV96 503 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 DCDC2CA8MYV0 355 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 IPO5O00410 1097 aaKnown RBP15.42■□□□□ 0.06
SHMT2-228ENST00000557302 ZNF286BP0CG31 522 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 CYP3A7P24462 503 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 GJB2P29033 226 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 CDK7P50613 346 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 CHMP4BP1P59074 171 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 CUL4AQ13619 759 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 LETM2Q2VYF4 491 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 NBPF20Q3BBV1 942 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 MOXD1Q6UVY6 613 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 ANKRD33Q7Z3H0 272 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 KAT2BQ92831 832 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 TNFRSF25Q93038 417 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 LENG9Q96B70 501 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 TOX2Q96NM4 488 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 NAP1L4Q99733 375 aaKnown RBP15.42■□□□□ 0.06
SHMT2-228ENST00000557302 KATNAL1Q9BW62 490 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 MYH7BA7E2Y1 1941 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 ALPK3Q96L96 1907 aa15.42■□□□□ 0.06
SHMT2-228ENST00000557302 H0YGN5 161 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 TDP2O95551 362 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 F2P00734 622 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 LGALS2P05162 132 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 PSEN2P49810 448 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 Q4G0T1 1027 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 FAM47CQ5HY64 1035 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 EARS2Q5JPH6 523 aaKnown RBP15.41■□□□□ 0.06
SHMT2-228ENST00000557302 SEPT1Q8WYJ6 367 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 SNX21Q969T3 373 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 UIMC1Q96RL1 719 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 TBC1D22BQ9NU19 505 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 PRKAG2Q9UGJ0 569 aa15.41■□□□□ 0.06
SHMT2-228ENST00000557302 ZMYND8Q9ULU4 1186 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-228ENST00000557302 RANBP2P49792 3224 aaKnown RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 FAM205CA6NFA0 338 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 K7ELQ4 463 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 DDX39AO00148 427 aaKnown RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 TLR3O15455 904 aaKnown RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 CLTBP09497 229 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 GCFC2P16383 781 aaKnown RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 TCF7P36402 384 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 GNL2Q13823 731 aaKnown RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 MFSD10Q14728 455 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 KIAA0753Q2KHM9 967 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 UTP14CQ5TAP6 766 aaKnown RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 NFRKBQ6P4R8 1299 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 FAM126BQ8IXS8 530 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 MBOAT7Q96N66 472 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 C16orf70Q9BSU1 422 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 FOXP1Q9H334 677 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 PRDM5Q9NQX1 630 aaPredicted RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms