RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 MYD88Q99836 296 aa6.03□□□□□ -1.44
SCFD1-223ENST00000557076 COL4A1P02462 1669 aa6.03□□□□□ -1.44
SCFD1-223ENST00000557076 LAMB2P55268 1798 aa6.03□□□□□ -1.44
SCFD1-223ENST00000557076 GADD45BO75293 160 aaPredicted RBP6.02□□□□□ -1.45
SCFD1-223ENST00000557076 CSF1RP07333 972 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 FAM87AP0C7U9 286 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 LIG1P18858 919 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 KCNJ4P48050 445 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 ARHGAP4P98171 946 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 HDLBPQ00341 1268 aaKnown RBP6.02□□□□□ -1.45
SCFD1-223ENST00000557076 LMOD3Q0VAK6 560 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 MAP3K12Q12852 859 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 ECM1Q16610 540 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 DCAF15Q66K64 600 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 ZNF804AQ7Z570 1209 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 SPRED2Q7Z698 418 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 FAM83AQ86UY5 434 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 SMYD4Q8IYR2 804 aaPredicted RBP6.02□□□□□ -1.45
SCFD1-223ENST00000557076 CCDC74AQ96AQ1 378 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 COA7Q96BR5 231 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 FANCD2OSQ96PS1 177 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.02□□□□□ -1.45
SCFD1-223ENST00000557076 CCDC86Q9H6F5 360 aaKnown RBP6.02□□□□□ -1.45
SCFD1-223ENST00000557076 MKNK2Q9HBH9 465 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 ZNF112Q9UJU3 913 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 TTF2Q9UNY4 1162 aaKnown RBP6.02□□□□□ -1.45
SCFD1-223ENST00000557076 SLC45A1Q9Y2W3 748 aa6.02□□□□□ -1.45
SCFD1-223ENST00000557076 DDX60Q8IY21 1712 aaKnown RBP6.02□□□□□ -1.45
SCFD1-223ENST00000557076 CDH23Q9H251 3354 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 BDP1A6H8Y1 2624 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 LAMB4A4D0S4 1761 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 CARNS1A5YM72 827 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 SNAP23O00161 211 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 TNPO2O14787 897 aaKnown RBP6.01□□□□□ -1.45
SCFD1-223ENST00000557076 GSTP1P09211 210 aaKnown RBP6.01□□□□□ -1.45
SCFD1-223ENST00000557076 CYP2C8P10632 490 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 COL6A1P12109 1028 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 FUT4P22083 530 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 TMPOP42166 694 aaKnown RBP6.01□□□□□ -1.45
SCFD1-223ENST00000557076 CRKP46108 304 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 SERPINB4P48594 390 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 PRKCQQ04759 706 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 CHRNDQ07001 517 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 CDK5R2Q13319 367 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 IFI16Q16666 785 aaKnown RBP6.01□□□□□ -1.45
SCFD1-223ENST00000557076 FASTKD5Q7L8L6 764 aaKnown RBP6.01□□□□□ -1.45
SCFD1-223ENST00000557076 ATG4DQ86TL0 474 aaPredicted RBP6.01□□□□□ -1.45
SCFD1-223ENST00000557076 TDRD7Q8NHU6 1098 aaKnown RBP6.01□□□□□ -1.45
SCFD1-223ENST00000557076 ARID3AQ99856 593 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 LBHD1Q9BQE6 289 aaPredicted RBP6.01□□□□□ -1.45
SCFD1-223ENST00000557076 PLA2G12BQ9BX93 195 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 CHMP4AQ9BY43 222 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 ZNF341Q9BYN7 854 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 PHAXQ9H814 394 aaKnown RBP6.01□□□□□ -1.45
SCFD1-223ENST00000557076 GJD2Q9UKL4 321 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 VAV3Q9UKW4 847 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 PSME4Q14997 1843 aa6.01□□□□□ -1.45
SCFD1-223ENST00000557076 MAPK8IP3Q9UPT6 1336 aa6□□□□□ -1.45
SCFD1-223ENST00000557076 TMEM265A0A087WTH1 108 aa6□□□□□ -1.45
SCFD1-223ENST00000557076 EIF1AYO14602 144 aaKnown RBP6□□□□□ -1.45
SCFD1-223ENST00000557076 DDX58O95786 925 aaKnown RBP6□□□□□ -1.45
SCFD1-223ENST00000557076 HMGCRP04035 888 aa6□□□□□ -1.45
SCFD1-223ENST00000557076 SMAD3P84022 425 aaKnown RBP6□□□□□ -1.45
SCFD1-223ENST00000557076 PPP2R3AQ06190 1150 aa6□□□□□ -1.45
SCFD1-223ENST00000557076 MFSD14BQ5SR56 506 aa6□□□□□ -1.45
SCFD1-223ENST00000557076 NOL9Q5SY16 702 aaKnown RBP6□□□□□ -1.45
SCFD1-223ENST00000557076 MIGA2Q7L4E1 593 aa6□□□□□ -1.45
SCFD1-223ENST00000557076 PLD6Q8N2A8 252 aaKnown RBP6□□□□□ -1.45
SCFD1-223ENST00000557076 ATXN2LQ8WWM7 1075 aaKnown RBP6□□□□□ -1.45
SCFD1-223ENST00000557076 PCOLCE2Q9UKZ9 415 aa6□□□□□ -1.45
SCFD1-223ENST00000557076 PCDHGC5Q9Y5F6 944 aa6□□□□□ -1.45
SCFD1-223ENST00000557076 LAMB1P07942 1786 aa6□□□□□ -1.45
SCFD1-223ENST00000557076 PFASO15067 1338 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 A0A0G2JLL6 359 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-223ENST00000557076 ZNF862O60290 1169 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 TAF5LO75529 589 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 IGKV5-2P06315 115 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 CD8BP10966 210 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 FOSL2P15408 326 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 FAAP100Q0VG06 881 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 BNIP3Q12983 259 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 LRRC26Q2I0M4 334 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 MAP3K21Q5TCX8 1036 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 APOBEC3HQ6NTF7 200 aaKnown RBP5.99□□□□□ -1.45
SCFD1-223ENST00000557076 KSR2Q6VAB6 950 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 PRRT2Q7Z6L0 340 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-223ENST00000557076 GLIS3Q8NEA6 775 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 MYLIPQ8WY64 445 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 WDR89Q96FK6 387 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-223ENST00000557076 DMRTB1Q96MA1 342 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 ZDHHC15Q96MV8 337 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 C1QTNF1Q9BXJ1 281 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 TTYH1Q9H313 450 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-223ENST00000557076 C1orf115Q9H7X2 142 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 RC3H2Q9HBD1 1191 aaKnown RBP5.99□□□□□ -1.45
SCFD1-223ENST00000557076 DISC1Q9NRI5 854 aa5.99□□□□□ -1.45
SCFD1-223ENST00000557076 LAS1LQ9Y4W2 734 aaKnown RBP5.99□□□□□ -1.45
SCFD1-223ENST00000557076 COL2A1P02458 1487 aaPredicted RBP5.98□□□□□ -1.45
SCFD1-223ENST00000557076 ANKRD18BA2A2Z9 1011 aa5.98□□□□□ -1.45
SCFD1-223ENST00000557076 PI4KAP2A4QPH2 592 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms