RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 PLEKP08567 350 aaPredicted RBP5.43□□□□□ -1.54
SYNE2-223ENST00000557005 DLATP10515 647 aaKnown RBP5.43□□□□□ -1.54
SYNE2-223ENST00000557005 CHN1P15882 459 aa5.43□□□□□ -1.54
SYNE2-223ENST00000557005 POLE2P56282 527 aa5.43□□□□□ -1.54
SYNE2-223ENST00000557005 GLE1Q53GS7 698 aaKnown RBP5.43□□□□□ -1.54
SYNE2-223ENST00000557005 TMTC3Q6ZXV5 915 aa5.43□□□□□ -1.54
SYNE2-223ENST00000557005 TSNARE1Q96NA8 513 aa5.43□□□□□ -1.54
SYNE2-223ENST00000557005 GPR101Q96P66 508 aaPredicted RBP5.43□□□□□ -1.54
SYNE2-223ENST00000557005 CPVLQ9H3G5 476 aa5.43□□□□□ -1.54
SYNE2-223ENST00000557005 PCIF1Q9H4Z3 704 aa5.43□□□□□ -1.54
SYNE2-223ENST00000557005 NPHP4O75161 1426 aaPredicted RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PEAK1Q9H792 1746 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 I3L4J1 428 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PLCG2P16885 1265 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 NR2F2P24468 414 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 TRAPPC10P48553 1259 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 UBXN2AP68543 259 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 MECOMQ03112 1051 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 NCAPHQ15003 741 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 WDR44Q5JSH3 913 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ENAHQ8N8S7 591 aaPredicted RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 LRRC8CQ8TDW0 803 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 RBM17Q96I25 401 aaKnown RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 SEC16BQ96JE7 1060 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 TRIM51Q9BSJ1 452 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PHF20Q9BVI0 1012 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PSTPIP2Q9H939 334 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ADD3Q9UEY8 706 aaKnown RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 DAAM1Q9Y4D1 1078 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 SPATA31D1Q6ZQQ2 1576 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 MEFVO15553 781 aaPredicted RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 KIF1CO43896 1103 aaKnown RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 LMNB1P20700 586 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PDE6CP51160 858 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 IL17RAQ96F46 866 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ASAP1Q9ULH1 1129 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ANKARQ7Z5J8 1434 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 GCFC2P16383 781 aaKnown RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ZYXQ15942 572 aaKnown RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PTGISQ16647 500 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PFKFB3Q16875 520 aaPredicted RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 USP49Q70CQ1 688 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 RPUSD2Q8IZ73 545 aaKnown RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 MSANTD4Q8NCY6 345 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 IGDCC4Q8TDY8 1250 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 CYFIP2Q96F07 1278 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 FMO2Q99518 471 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 NT5C3AQ9H0P0 336 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 SNX12Q9UMY4 172 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 AXIN2Q9Y2T1 843 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ANO9A1A5B4 782 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ARHGAP42A6NI28 874 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 POTEMA6NI47 508 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 RAD51CO43502 376 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 SPAG7O75391 227 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PRPF6O94906 941 aaKnown RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 TCP10Q12799 353 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 COASYQ13057 564 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 BIRC3Q13489 604 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 RCN2Q14257 317 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 KCTD19Q17RG1 926 aaPredicted RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 TMCO4Q5TGY1 634 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 NSMFQ6X4W1 530 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 CROCCP2Q86T23 111 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 SPATA24Q86W54 205 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 KIRREL3Q8IZU9 778 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 SPATA4Q8NEY3 305 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 SH3RF3Q8TEJ3 882 aaPredicted RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ZNF622Q969S3 477 aaKnown RBP eCLIP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 CFAP36Q96G28 342 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 RILPQ96NA2 401 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 CUEDC2Q9H467 287 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 TAF1DQ9H5J8 278 aaPredicted RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 KCND1Q9NSA2 647 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 RAB20Q9NX57 234 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ANAPC5Q9UJX4 755 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 DUSP10Q9Y6W6 482 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 XRN1Q8IZH2 1706 aaKnown RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ARHGEF35A5YM69 484 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 SFI1A8K8P3 1242 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 H0Y3Z8 333 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 ECEL1O95672 775 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 SYF2O95926 243 aaKnown RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 TROVE2P10155 538 aaKnown RBP eCLIP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 STAT3P40763 770 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 MSH2P43246 934 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 MRPL12P52815 198 aaKnown RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 SEC24CP53992 1094 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 IL9RQ01113 521 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PABPC4Q13310 644 aaKnown RBP eCLIP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PTPAQ15257 358 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 FAM26FQ5R3K3 315 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 GALNT17Q6IS24 598 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 USP17L2Q6R6M4 530 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 PALM2Q8IXS6 379 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 CCDC89Q8N998 374 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 GJA10Q969M2 543 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 CCT8L2Q96SF2 557 aa5.42□□□□□ -1.54
SYNE2-223ENST00000557005 EPB41L4AQ9HCS5 686 aaPredicted RBP5.42□□□□□ -1.54
SYNE2-223ENST00000557005 UBE2TQ9NPD8 197 aaPredicted RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms