RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 AMY2AP04746 511 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 AMY2BP19961 511 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 ZNF460Q14592 562 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 GPR19Q15760 415 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 PLEKHG4Q58EX7 1191 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 FAM47CQ5HY64 1035 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 SDE2Q6IQ49 451 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 FAM129CQ86XR2 697 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 SMARCC2Q8TAQ2 1214 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 CD244Q9BZW8 370 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 SMURF1Q9HCE7 757 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 DTLQ9NZJ0 730 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 DSEQ9UL01 958 aa6.76□□□□□ -1.33
SCFD1-221ENST00000556534 CNOT6Q9ULM6 557 aaKnown RBP6.76□□□□□ -1.33
SCFD1-221ENST00000556534 TNPO3Q9Y5L0 923 aaKnown RBP6.76□□□□□ -1.33
SCFD1-221ENST00000556534 MAN2B1O00754 1011 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 LTFP02788 710 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 PLA2G1BP04054 148 aaKnown RBP6.75□□□□□ -1.33
SCFD1-221ENST00000556534 ASLP04424 464 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 PDE6AP16499 860 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 IGFALSP35858 605 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 STAT5AP42229 794 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 DNM2P50570 870 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 EPHA5P54756 1037 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 TUSC3Q13454 348 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 C21orf62-AS1Q17RA5 79 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 CR1LQ2VPA4 569 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 RBM12BQ8IXT5 1001 aaKnown RBP6.75□□□□□ -1.33
SCFD1-221ENST00000556534 FAM26EQ8N5C1 309 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 CISD2Q8N5K1 135 aaKnown RBP6.75□□□□□ -1.33
SCFD1-221ENST00000556534 KRTAP9-9Q9BYP9 154 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 KRTAP9-4Q9BYQ2 154 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 PDGFDQ9GZP0 370 aaPredicted RBP6.75□□□□□ -1.33
SCFD1-221ENST00000556534 GOLGA2P5Q9HBQ8 144 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 CATSPERZQ9NTU4 200 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 KCTD3Q9Y597 815 aa6.75□□□□□ -1.33
SCFD1-221ENST00000556534 CYP2C8P10632 490 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 JAM2P57087 298 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 ST5P78524 1137 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 HTRA3P83110 453 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 LACTBP83111 547 aaPredicted RBP6.74□□□□□ -1.33
SCFD1-221ENST00000556534 FOXO4P98177 505 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 FIGNQ5HY92 759 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 ZCCHC8Q6NZY4 707 aaKnown RBP6.74□□□□□ -1.33
SCFD1-221ENST00000556534 ARHGAP36Q6ZRI8 547 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 KCTD1Q719H9 257 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 OVCH1Q7RTY7 1134 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.74□□□□□ -1.33
SCFD1-221ENST00000556534 ANKLE2Q86XL3 938 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 PTRH1Q86Y79 214 aaKnown RBP6.74□□□□□ -1.33
SCFD1-221ENST00000556534 C1QL4Q86Z23 238 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 TRIM48Q8IWZ4 208 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 IGSF22Q8N9C0 903 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 PANK1Q8TE04 598 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 CLEC4DQ8WXI8 215 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 NINJ1Q92982 152 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 SYT3Q9BQG1 590 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 INTS7Q9NVH2 962 aaKnown RBP6.74□□□□□ -1.33
SCFD1-221ENST00000556534 PLAAQ9Y263 795 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 FAN1Q9Y2M0 1017 aa6.74□□□□□ -1.33
SCFD1-221ENST00000556534 FAM83GA6ND36 823 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 DBX1A6NMT0 343 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 RFXAPO00287 272 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 GSTA4O15217 222 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 OPA1O60313 960 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 GLRX3O76003 335 aaKnown RBP6.73□□□□□ -1.33
SCFD1-221ENST00000556534 NPTXRO95502 500 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 LRG1P02750 347 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 GRIN1Q05586 938 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 CRY1Q16526 586 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 TMEM177Q53S58 311 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 DALRD3Q5D0E6 543 aaKnown RBP6.73□□□□□ -1.33
SCFD1-221ENST00000556534 FSTL4Q6MZW2 842 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 TEPPQ6URK8 271 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 ZC3H18Q86VM9 953 aaKnown RBP6.73□□□□□ -1.33
SCFD1-221ENST00000556534 OSTM1Q86WC4 334 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 NIM1KQ8IY84 436 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 DACT3Q96B18 629 aaPredicted RBP6.73□□□□□ -1.33
SCFD1-221ENST00000556534 DDX11Q96FC9 970 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 TOE1Q96GM8 510 aaKnown RBP6.73□□□□□ -1.33
SCFD1-221ENST00000556534 NOX5Q96PH1 765 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 GORASP1Q9BQQ3 440 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 YIPF4Q9BSR8 244 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 MAGEC2Q9UBF1 373 aaPredicted RBP6.73□□□□□ -1.33
SCFD1-221ENST00000556534 NUB1Q9Y5A7 615 aa6.73□□□□□ -1.33
SCFD1-221ENST00000556534 KRTAP4-8A0A0G2JLE6 195 aa6.72□□□□□ -1.33
SCFD1-221ENST00000556534 B4E1Z4 1266 aa6.72□□□□□ -1.33
SCFD1-221ENST00000556534 APPP05067 770 aa6.72□□□□□ -1.33
SCFD1-221ENST00000556534 KRT15P19012 456 aa6.72□□□□□ -1.33
SCFD1-221ENST00000556534 MECP2P51608 486 aaKnown RBP6.72□□□□□ -1.33
SCFD1-221ENST00000556534 CNKSR3Q6P9H4 555 aa6.72□□□□□ -1.33
SCFD1-221ENST00000556534 HHIPL2Q6UWX4 724 aa6.72□□□□□ -1.33
SCFD1-221ENST00000556534 NOSTRINQ8IVI9 506 aa6.72□□□□□ -1.33
SCFD1-221ENST00000556534 HSPBP1Q9NZL4 362 aa6.72□□□□□ -1.33
SCFD1-221ENST00000556534 PMF1-BGLAPU3KQ54 211 aa6.72□□□□□ -1.33
SCFD1-221ENST00000556534 KCNK3O14649 394 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 HSD3B2P26439 372 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 ITGA1P56199 1179 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 VWA3BQ502W6 1294 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 PAN2Q504Q3 1202 aaKnown RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms