RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 ABCB11O95342 1321 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 HLA-DOAP06340 250 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 PLA2G4BP0C869 781 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 POTEIP0CG38 1075 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 POLR2FP61218 127 aaKnown RBP16.1■□□□□ 0.17
ACTN1-211ENST00000553882 APOBEC3HQ6NTF7 200 aaKnown RBP16.1■□□□□ 0.17
ACTN1-211ENST00000553882 POTEGQ6S5H5 508 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 POTEEQ6S8J3 1075 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 SRCAPQ6ZRS2 3230 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 SP8Q8IXZ3 490 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 FAM71BQ8TC56 605 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 MTMR8Q96EF0 704 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 ALS2CR12Q96Q35 445 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 ACBD3Q9H3P7 528 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 FAM204AQ9H8W3 233 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 ATP6V0A2Q9Y487 856 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 TARSL2A2RTX5 802 aaKnown RBP16.1■□□□□ 0.17
ACTN1-211ENST00000553882 RNF40O75150 1001 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 TAL1P17542 331 aaPredicted RBP16.1■□□□□ 0.17
ACTN1-211ENST00000553882 SLC7A5Q01650 507 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 HGSNATQ68CP4 663 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 MSL3Q8N5Y2 521 aaKnown RBP16.1■□□□□ 0.17
ACTN1-211ENST00000553882 OSBPL9Q96SU4 736 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 LRRC1Q9BTT6 524 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 LSM14BQ9BX40 385 aaKnown RBP16.1■□□□□ 0.17
ACTN1-211ENST00000553882 HPCAL4Q9UM19 191 aa16.1■□□□□ 0.17
ACTN1-211ENST00000553882 UBR3Q6ZT12 1888 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 MYH4Q9Y623 1939 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 KRT18P05783 430 aaKnown RBP16.09■□□□□ 0.17
ACTN1-211ENST00000553882 EEF2P13639 858 aaKnown RBP16.09■□□□□ 0.17
ACTN1-211ENST00000553882 MCM3P25205 808 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 FAM83BQ5T0W9 1011 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 MEX3CQ5U5Q3 659 aaKnown RBP16.09■□□□□ 0.17
ACTN1-211ENST00000553882 PROM2Q8N271 834 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 TEKT1Q969V4 418 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 ZFP91Q96JP5 570 aaPredicted RBP16.09■□□□□ 0.17
ACTN1-211ENST00000553882 SELENOOQ9BVL4 669 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 NT5C3AQ9H0P0 336 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 DBNDD1Q9H9R9 158 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 DMGDHQ9UI17 866 aaKnown RBP16.09■□□□□ 0.17
ACTN1-211ENST00000553882 MEIS1O00470 390 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 TLR2O60603 784 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 MED24O75448 989 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 NOL4O94818 638 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 LCA5LO95447 670 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 SYF2O95926 243 aaKnown RBP16.09■□□□□ 0.17
ACTN1-211ENST00000553882 GCFC2P16383 781 aaKnown RBP16.09■□□□□ 0.17
ACTN1-211ENST00000553882 BRD2P25440 801 aaKnown RBP16.09■□□□□ 0.17
ACTN1-211ENST00000553882 IQCEQ6IPM2 695 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 KIAA0825Q8IV33 1275 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 SPATA4Q8NEY3 305 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 SCFD1Q8WVM8 642 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 TRIM34Q9BYJ4 488 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 POLD4Q9HCU8 107 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 PSD3Q9NYI0 1048 aa16.09■□□□□ 0.17
ACTN1-211ENST00000553882 ATF5Q9Y2D1 282 aaPredicted RBP16.09■□□□□ 0.17
ACTN1-211ENST00000553882 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.09■□□□□ 0.17
ACTN1-211ENST00000553882 CDC37Q16543 378 aaPredicted RBP16.08■□□□□ 0.17
ACTN1-211ENST00000553882 ASTE1Q2TB18 679 aaPredicted RBP16.08■□□□□ 0.17
ACTN1-211ENST00000553882 USH1GQ495M9 461 aa16.08■□□□□ 0.17
ACTN1-211ENST00000553882 CCDC181Q5TID7 509 aa16.08■□□□□ 0.17
ACTN1-211ENST00000553882 CCNI2Q6ZMN8 369 aaPredicted RBP16.08■□□□□ 0.17
ACTN1-211ENST00000553882 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.08■□□□□ 0.17
ACTN1-211ENST00000553882 CCDC65Q8IXS2 484 aa16.08■□□□□ 0.17
ACTN1-211ENST00000553882 ANO3Q9BYT9 981 aa16.08■□□□□ 0.17
ACTN1-211ENST00000553882 MED4Q9NPJ6 270 aa16.08■□□□□ 0.17
ACTN1-211ENST00000553882 KDM3AQ9Y4C1 1321 aa16.08■□□□□ 0.16
ACTN1-211ENST00000553882 CYP11B2P19099 503 aa16.08■□□□□ 0.16
ACTN1-211ENST00000553882 RBM5P52756 815 aaKnown RBP eCLIP16.08■□□□□ 0.16
ACTN1-211ENST00000553882 PRR16Q569H4 304 aa16.08■□□□□ 0.16
ACTN1-211ENST00000553882 MS4A14Q96JA4 679 aa16.08■□□□□ 0.16
ACTN1-211ENST00000553882 P2RX7Q99572 595 aaKnown RBP16.08■□□□□ 0.16
ACTN1-211ENST00000553882 EMILIN3Q9NT22 766 aa16.08■□□□□ 0.16
ACTN1-211ENST00000553882 PCDHA2Q9Y5H9 948 aa16.08■□□□□ 0.16
ACTN1-211ENST00000553882 GGCXP38435 758 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 CASP5P51878 434 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 RAPGEF1Q13905 1077 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 SLC9C1Q4G0N8 1177 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 SFMBT2Q5VUG0 894 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 SUGT1Q9Y2Z0 365 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 HYOU1Q9Y4L1 999 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 ARFGEF1Q9Y6D6 1849 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 DDTLA6NHG4 134 aaPredicted RBP16.07■□□□□ 0.16
ACTN1-211ENST00000553882 ACTN2P35609 894 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 EPS15P42566 896 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 PSMC6P62333 389 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 IKQ13123 557 aaPredicted RBP16.07■□□□□ 0.16
ACTN1-211ENST00000553882 ADAM9Q13443 819 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 ARSHQ5FYA8 562 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.07■□□□□ 0.16
ACTN1-211ENST00000553882 TLR10Q9BXR5 811 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 PLEKHA4Q9H4M7 779 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 VIPAS39Q9H9C1 493 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 KCNMB3Q9NPA1 279 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 CEP72Q9P209 647 aa16.07■□□□□ 0.16
ACTN1-211ENST00000553882 ZC3H4Q9UPT8 1303 aaKnown RBP16.06■□□□□ 0.16
ACTN1-211ENST00000553882 KLRG2A4D1S0 409 aaPredicted RBP16.06■□□□□ 0.16
ACTN1-211ENST00000553882 TRIM37O94972 964 aa16.06■□□□□ 0.16
ACTN1-211ENST00000553882 CRKP46108 304 aa16.06■□□□□ 0.16
ACTN1-211ENST00000553882 PABPC4Q13310 644 aaKnown RBP eCLIP16.06■□□□□ 0.166e-7■■□□□ 13.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms