RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	FAM133A	Q8N9E0	248 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	RPS6KC1	Q96S38	1066 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	SEPT10	Q9P0V9	454 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	LCMT1	Q9UIC8	334 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	ANAPC5	Q9UJX4	755 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	BCS1L	Q9Y276	419 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	ARHGEF37	A1IGU5	675 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	LARGE1	O95461	756 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	GSTA1	P08263	222 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	GSTA2	P09210	222 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	KPNA2	P52292	529 aa	Known RBP	12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	PDE1B	Q01064	536 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	RASGRF1	Q13972	1273 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	GLE1	Q53GS7	698 aa	Known RBP	12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	TTBK2	Q6IQ55	1244 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	RHOT2	Q8IXI1	618 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	PLCD3	Q8N3E9	789 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	MB21D1	Q8N884	522 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	STRBP	Q96SI9	672 aa	Known RBP	12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	KDM6B	O15054	1643 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	CCDC188	H7C350	402 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	MFAP3L	O75121	409 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	CCT5	P48643	541 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	GRAP	Q13588	217 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	SUPT20HL1	Q3ZLR7	823 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	FAM47C	Q5HY64	1035 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	RSPH3	Q86UC2	560 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	GBP7	Q8N8V2	638 aa	Predicted RBP	12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	TTLL11	Q8NHH1	800 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	GRAPL	Q8TC17	118 aa	Predicted RBP	12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	CEP170P1	Q96L14	293 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	PIH1D3	Q9NQM4	214 aa	Known RBP	12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	SOWAHD	A6NJG2	315 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	DNAJC24	Q6P3W2	148 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	EMB	Q6PCB8	327 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	GRAMD1C	Q8IYS0	662 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	FTO	Q9C0B1	505 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	PTPN22	Q9Y2R2	807 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	CDC42BPG	Q6DT37	1551 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	POC1B-GALNT4	F8VUJ3	575 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	LIG3	P49916	1009 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	KIF22	Q14807	665 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	SPOUT1	Q5T280	376 aa	Known RBP	12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	FAM196A	Q6ZSG2	479 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	CAPN12	Q6ZSI9	719 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	TMTC3	Q6ZXV5	915 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	PROM2	Q8N271	834 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	ACRBP	Q8NEB7	543 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	UHMK1	Q8TAS1	419 aa	Known RBP	12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	TRIM56	Q9BRZ2	755 aa	Known RBP	12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	COA1	Q9GZY4	146 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	PLA2R1	Q13018	1463 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	PRR36	Q9H6K5	1346 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	OSBP	P22059	807 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	MECOM	Q03112	1051 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	PPARD	Q03181	441 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	RBBP5	Q15291	538 aa	Known RBP	12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	GPC4	O75487	556 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	PSAP	P07602	524 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	ITK	Q08881	620 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	NEK9	Q8TD19	979 aa		12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	TACO1	Q9BSH4	297 aa	Known RBP	12.49	□□□□□ -0.41
SYNE2-208	ENST00000553289	PRAMEF22	A3QJZ6	481 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	GFPT2	O94808	682 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	MOCS3	O95396	460 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	KRT1	P04264	644 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	ECE1	P42892	770 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	MSH2	P43246	934 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	PLTP	P55058	493 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	PPP1R18	Q6NYC8	613 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	UNC13D	Q70J99	1090 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	MICAL1	Q8TDZ2	1067 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	DCAF4	Q8WV16	495 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	ANO3	Q9BYT9	981 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	MID2	Q9UJV3	735 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	SF3A3	Q12874	501 aa	Known RBP eCLIP	12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	KRT31	Q15323	416 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	KCTD16	Q68DU8	428 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	SLFN12L	Q6IEE8	588 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	RAB44	Q7Z6P3	723 aa	Predicted RBP	12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	COA7	Q96BR5	231 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	PARD6B	Q9BYG5	372 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	UBE2T	Q9NPD8	197 aa	Predicted RBP	12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	A2ML1	A8K2U0	1454 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	CP	P00450	1065 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	CDK8	P49336	464 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	DHX9	Q08211	1270 aa	Known RBP	12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	SPICE1	Q8N0Z3	855 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	SDCCAG3	Q96C92	435 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	EEF2KMT	Q96G04	330 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	ACTR5	Q9H9F9	607 aa	Predicted RBP	12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	ATP8A1	Q9Y2Q0	1164 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	SEC31A	O94979	1220 aa	Known RBP	12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	CLTA	P09496	248 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	USP17L8	P0C7I0	530 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	ARL4A	P40617	200 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	PI16	Q6UXB8	463 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	BAG5	Q9UL15	447 aa		12.48	□□□□□ -0.41
SYNE2-208	ENST00000553289	SCIN	Q9Y6U3	715 aa		12.48	□□□□□ -0.41

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