RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 NOX5Q96PH1 765 aa5.34□□□□□ -1.56
LIMA1-214ENST00000552783 CICQ96RK0 1608 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 DUOX1Q9NRD9 1551 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 MYMKA6NI61 221 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 HMGB1P1B2RPK0 211 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 KCNK3O14649 394 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 SHBGP04278 402 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 GCFC2P16383 781 aaKnown RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 CTNNA1P35221 906 aaKnown RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 RCAN1P53805 252 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 ELF3P78545 371 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 GLE1Q53GS7 698 aaKnown RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 MEI1Q5TIA1 1274 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 CENPPQ6IPU0 288 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 PDXDC1Q6P996 788 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 LRRC55Q6ZSA7 311 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 SLC51AQ86UW1 340 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 UBLCP1Q8WVY7 318 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 HVCN1Q96D96 273 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 NGLY1Q96IV0 654 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 SETDB2Q96T68 719 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 CRNKL1Q9BZJ0 848 aaKnown RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TAF1DQ9H5J8 278 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 AMACRQ9UHK6 382 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 ANAPC4Q9UJX5 808 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TMEM59LQ9UK28 342 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 AGAP1Q9UPQ3 857 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 MYH4Q9Y623 1939 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 A8MUI8 341 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 GCOM1H8Y6P7 765 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 GNPATO15228 680 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 MGRN1O60291 552 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 MYZAPP0CAP1 466 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 ZBTB48P10074 688 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 DRD4P21917 467 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 KLRK1P26718 216 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 IL6STP40189 918 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TRAPPC10P48553 1259 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 MRPL12P52815 198 aaKnown RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 CLNS1AP54105 237 aaKnown RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 EIF6P56537 245 aaKnown RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 KIAA0753Q2KHM9 967 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 ERFEQ4G0M1 354 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 PPP4R3AQ6IN85 833 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 HIBCHQ6NVY1 386 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 MICALCLQ6ZW33 695 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 MAEAQ7L5Y9 396 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 CABP7Q86V35 215 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TATDN2Q93075 761 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 C8orf37Q96NL8 207 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 GPR101Q96P66 508 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TRIM31Q9BZY9 425 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 PLCB1Q9NQ66 1216 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 IL17RBQ9NRM6 502 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 BLOC1S4Q9NUP1 217 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 PANK4Q9NVE7 773 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TBC1D7Q9P0N9 293 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 BAIAP2L1Q9UHR4 511 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 PNMA2Q9UL42 364 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 THRAP3Q9Y2W1 955 aaKnown RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TAF1P21675 1872 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 FOXO6A8MYZ6 492 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 CLGNO14967 610 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TTI1O43156 1089 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 SART1O43290 800 aaKnown RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 PPIP5K2O43314 1243 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 ATP6V1G2O95670 118 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TSPY3P0CV98 308 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TSPY8P0CW00 308 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 ATXN8OSP0DMR3 200 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 ACTN1P12814 892 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 PRDX5P30044 214 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 CDR1P51861 262 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 POLR2FP61218 127 aaKnown RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 MYO1EQ12965 1108 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 XRCC4Q13426 336 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 NAA25Q14CX7 972 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 NAB2Q15742 525 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 LETM2Q2VYF4 491 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 ODF2Q5BJF6 829 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 FAM133AQ8N9E0 248 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TCP11Q8WWU5 503 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 PRCCQ92733 491 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 DYNLL2Q96FJ2 89 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 CDK5RAP3Q96JB5 506 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIMA1-214ENST00000552783 TANGO6Q9C0B7 1094 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 CCSER1Q9C0I3 900 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 DPH5Q9H2P9 285 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 NOD2Q9HC29 1040 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 PCDHA4Q9UN74 947 aa5.33□□□□□ -1.56
LIMA1-214ENST00000552783 PCNTO95613 3336 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 USP17L3A6NCW0 530 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 USP17L4A6NCW7 530 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 EDIL3O43854 480 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 CEP104O60308 925 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 CAND2O75155 1236 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 TFAP4Q01664 338 aa5.32□□□□□ -1.56
LIMA1-214ENST00000552783 PLCB4Q15147 1175 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms