RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SMARCA1P28370 1054 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 STAT3P40763 770 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 NT5C2P49902 561 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 RNASE9P60153 205 aaKnown RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 POLR2FP61218 127 aaKnown RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 GABPAQ06546 454 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 CCDC40Q4G0X9 1142 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 HAUS3Q68CZ6 603 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 TTC19Q6DKK2 380 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 POTEBQ6S5H4 581 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 CCDC84Q86UT8 332 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 MYOCDQ8IZQ8 938 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 MMGT1Q8N4V1 131 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 LSM14BQ9BX40 385 aaKnown RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 PACSIN1Q9BY11 444 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 BCAS3Q9H6U6 928 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 LRRC4BQ9NT99 713 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 PANK4Q9NVE7 773 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 CWC15Q9P013 229 aaKnown RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 FAM184BQ9ULE4 1060 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 KIAA1024Q9UPX6 916 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 UBR3Q6ZT12 1888 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 ESYT3A0FGR9 886 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 VGLL3A8MV65 326 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 MARCH6O60337 910 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 FTCDO95954 541 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 SNHG28P0DPA3 235 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 TAL1P17542 331 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-213ENST00000552720 MCM3P25205 808 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 CLK2P49760 499 aaKnown RBP8.28□□□□□ -1.08
LIMA1-213ENST00000552720 SCNN1DP51172 638 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 ZNF543Q08ER8 600 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 PDIA5Q14554 519 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 PTPROQ16827 1216 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 FAM26FQ5R3K3 315 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 FAM83BQ5T0W9 1011 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 CCDC181Q5TID7 509 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 C15orf52Q6ZUT6 534 aaKnown RBP8.28□□□□□ -1.08
LIMA1-213ENST00000552720 CERS5Q8N5B7 392 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 RIC8AQ9NPQ8 531 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 PCDHA12Q9UN75 941 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 HYOU1Q9Y4L1 999 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 COL4A3BPQ9Y5P4 624 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 KIF13BQ9NQT8 1826 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 A0A087X0T9 212 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.28□□□□□ -1.08
LIMA1-213ENST00000552720 IGKV6D-41A0A0C4DH26 115 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 PNMA6FA0A0J9YX94 578 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 MPHOSPH10O00566 681 aaKnown RBP8.28□□□□□ -1.08
LIMA1-213ENST00000552720 PJA2O43164 708 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 RPS6KA5O75582 802 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 FAM228BP0C875 321 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 PLCG2P16885 1265 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 ATP2B4P23634 1241 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 KLRC1P26715 233 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 CASP5P51878 434 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 SNAP25P60880 206 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 TRADDQ15628 312 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 ASPRV1Q53RT3 343 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 DNAJC21Q5F1R6 531 aaKnown RBP8.28□□□□□ -1.08
LIMA1-213ENST00000552720 SCFD1Q8WVM8 642 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 TBC1D5Q92609 795 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 FAM163AQ96GL9 167 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-213ENST00000552720 ALS2CR12Q96Q35 445 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 TSG101Q99816 390 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 RAB34Q9BZG1 259 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 GOLPH3Q9H4A6 298 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 ZHX3Q9H4I2 956 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 LTBP1Q14766 1721 aa8.28□□□□□ -1.08
LIMA1-213ENST00000552720 GREB1LQ9C091 1923 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-213ENST00000552720 SRCAPQ6ZRS2 3230 aa8.27□□□□□ -1.08
LIMA1-213ENST00000552720 SIPA1L1O43166 1804 aa8.27□□□□□ -1.08
LIMA1-213ENST00000552720 PLIN4Q96Q06 1357 aa8.27□□□□□ -1.08
LIMA1-213ENST00000552720 FAM170AA1A519 330 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 PALMO75781 387 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 SERPINB2P05120 415 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 GLI1P08151 1106 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 ACTN1P12814 892 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 TCP1P17987 556 aaKnown RBP8.27□□□□□ -1.09
LIMA1-213ENST00000552720 SHMT1P34896 483 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 FKBP3Q00688 224 aaKnown RBP8.27□□□□□ -1.09
LIMA1-213ENST00000552720 ORC2Q13416 577 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-213ENST00000552720 RAPGEF1Q13905 1077 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 PPP4R3AQ6IN85 833 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 ZNF572Q7Z3I7 529 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-213ENST00000552720 ZFPM1Q8IX07 1006 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 GOLGA6L1Q8N7Z2 621 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 FAM133AQ8N9E0 248 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 ARL8AQ96BM9 186 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 P2RX7Q99572 595 aaKnown RBP8.27□□□□□ -1.09
LIMA1-213ENST00000552720 PCDHA2Q9Y5H9 948 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 PCDHAC2Q9Y5I4 1007 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 ABCB11O95342 1321 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 POTEFA5A3E0 1075 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 GOLGA6CA6NDK9 693 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 MEIS1O00470 390 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 ABCB7O75027 752 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 MED24O75448 989 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 FGFR1OPO95684 399 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms