RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 ATP6V0A1Q93050 837 aa14□□□□□ -0.17
PTCH1-222ENST00000551425 RMDN3Q96TC7 470 aa14□□□□□ -0.17
PTCH1-222ENST00000551425 SEC62Q99442 399 aaKnown RBP14□□□□□ -0.17
PTCH1-222ENST00000551425 PHF7Q9BWX1 381 aaPredicted RBP14□□□□□ -0.17
PTCH1-222ENST00000551425 COL20A1Q9P218 1284 aa14□□□□□ -0.17
PTCH1-222ENST00000551425 ANAPC4Q9UJX5 808 aa14□□□□□ -0.17
PTCH1-222ENST00000551425 MRVI1Q9Y6F6 885 aa14□□□□□ -0.17
PTCH1-222ENST00000551425 PLXNA3P51805 1871 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 FOXP2O15409 715 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 GALR2O43603 387 aaPredicted RBP13.99□□□□□ -0.17
PTCH1-222ENST00000551425 SMARCA5O60264 1052 aaPredicted RBP13.99□□□□□ -0.17
PTCH1-222ENST00000551425 SNHG28P0DPA3 235 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 NBL1P41271 181 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 USH1GQ495M9 461 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 MYSM1Q5VVJ2 828 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 P2RX5Q93086 422 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 C16orf70Q9BSU1 422 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 TCP11L1Q9NUJ3 509 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 PLAGL2Q9UPG8 496 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 TRPC6Q9Y210 931 aa13.99□□□□□ -0.17
PTCH1-222ENST00000551425 USP15Q9Y4E8 981 aaPredicted RBP13.99□□□□□ -0.17
PTCH1-222ENST00000551425 TREHO43280 583 aa13.98□□□□□ -0.17
PTCH1-222ENST00000551425 PTPN21Q16825 1174 aa13.98□□□□□ -0.17
PTCH1-222ENST00000551425 HSDL1Q3SXM5 330 aa13.98□□□□□ -0.17
PTCH1-222ENST00000551425 FAM26DQ5JW98 314 aa13.98□□□□□ -0.17
PTCH1-222ENST00000551425 ZMYM1Q5SVZ6 1142 aa13.98□□□□□ -0.17
PTCH1-222ENST00000551425 CELF3Q5SZQ8 465 aaKnown RBP13.98□□□□□ -0.17
PTCH1-222ENST00000551425 ZNF689Q96CS4 500 aaPredicted RBP13.98□□□□□ -0.17
PTCH1-222ENST00000551425 GPATCH3Q96I76 525 aa13.98□□□□□ -0.17
PTCH1-222ENST00000551425 SPATA33Q96N06 139 aa13.98□□□□□ -0.17
PTCH1-222ENST00000551425 DCHS1Q96JQ0 3298 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 ABCB11O95342 1321 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 RIF1Q5UIP0 2472 aaKnown RBP13.97□□□□□ -0.17
PTCH1-222ENST00000551425 NR3C2P08235 984 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 CTSHP09668 335 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 SMIM10L2AP0DMW4 78 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 SMIM10L2BP0DMW5 78 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 MS4A1P11836 297 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 ATF7P17544 494 aaPredicted RBP13.97□□□□□ -0.17
PTCH1-222ENST00000551425 ID4P47928 161 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 NAALADL2Q58DX5 795 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 ARHGEF16Q5VV41 709 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 KCNV1Q6PIU1 500 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 ADGRD2Q7Z7M1 963 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 MCF2L2Q86YR7 1114 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 RNPEPQ9H4A4 650 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 DDX19BQ9UMR2 479 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 MYO15AQ9UKN7 3530 aa13.97□□□□□ -0.17
PTCH1-222ENST00000551425 KIAA1217Q5T5P2 1943 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 H3BRB1 525 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 RGS20O76081 388 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 CSPG5O95196 566 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 GLP2RO95838 553 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 EIF2AK2P19525 551 aaKnown RBP13.96□□□□□ -0.17
PTCH1-222ENST00000551425 DNAJB1P25685 340 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 BTG3Q14201 252 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-222ENST00000551425 GPATCH4Q5T3I0 446 aaKnown RBP13.96□□□□□ -0.17
PTCH1-222ENST00000551425 TSHZ3Q63HK5 1081 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 SPPL3Q8TCT6 385 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 SUSD6Q92537 303 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 RPGRIP1Q96KN7 1286 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 RIPOR3Q96MK2 946 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 TTC14Q96N46 770 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 TUT1Q9H6E5 874 aaKnown RBP13.96□□□□□ -0.17
PTCH1-222ENST00000551425 PXMP2Q9NR77 195 aa13.96□□□□□ -0.17
PTCH1-222ENST00000551425 BARX2Q9UMQ3 279 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-222ENST00000551425 KDM4AO75164 1064 aa13.95□□□□□ -0.18
PTCH1-222ENST00000551425 GGPS1O95749 300 aa13.95□□□□□ -0.18
PTCH1-222ENST00000551425 ITGB1P05556 798 aa13.95□□□□□ -0.18
PTCH1-222ENST00000551425 TGFB3P10600 412 aa13.95□□□□□ -0.18
PTCH1-222ENST00000551425 NRIP1P48552 1158 aa13.95□□□□□ -0.18
PTCH1-222ENST00000551425 FAM186AA6NE01 2351 aa13.95□□□□□ -0.18
PTCH1-222ENST00000551425 ENPP3O14638 875 aa13.94□□□□□ -0.18
PTCH1-222ENST00000551425 DGKIO75912 1065 aa13.94□□□□□ -0.18
PTCH1-222ENST00000551425 PDGFBP01127 241 aaPredicted RBP13.94□□□□□ -0.18
PTCH1-222ENST00000551425 HSPD1P10809 573 aaKnown RBP13.94□□□□□ -0.18
PTCH1-222ENST00000551425 GNAT1P11488 350 aa13.94□□□□□ -0.18
PTCH1-222ENST00000551425 ADAM17P78536 824 aa13.94□□□□□ -0.18
PTCH1-222ENST00000551425 SP2Q02086 613 aa13.94□□□□□ -0.18
PTCH1-222ENST00000551425 CDC37Q16543 378 aaPredicted RBP13.94□□□□□ -0.18
PTCH1-222ENST00000551425 EHMT1Q9H9B1 1298 aa13.94□□□□□ -0.18
PTCH1-222ENST00000551425 SORBS3O60504 671 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 CHRNA1P02708 482 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 LGALS2P05162 132 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 UBA1P22314 1058 aaKnown RBP13.93□□□□□ -0.18
PTCH1-222ENST00000551425 ALX1Q15699 326 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 CMTR2Q8IYT2 770 aaKnown RBP13.93□□□□□ -0.18
PTCH1-222ENST00000551425 ATP8B4Q8TF62 1192 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 POF1BQ8WVV4 589 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 NKD2Q969F2 451 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-222ENST00000551425 UBA5Q9GZZ9 404 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 CPVLQ9H3G5 476 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 CHMP4BQ9H444 224 aaKnown RBP13.93□□□□□ -0.18
PTCH1-222ENST00000551425 TOMM22Q9NS69 142 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 SETD4Q9NVD3 440 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 MRPL11Q9Y3B7 192 aaKnown RBP13.93□□□□□ -0.18
PTCH1-222ENST00000551425 MRPL42Q9Y6G3 142 aaKnown RBP13.93□□□□□ -0.18
PTCH1-222ENST00000551425 VPS13AQ96RL7 3174 aa13.93□□□□□ -0.18
PTCH1-222ENST00000551425 GVINP1Q7Z2Y8 2422 aa13.92□□□□□ -0.18
PTCH1-222ENST00000551425 FSD2A1L4K1 749 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms