RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ARIH2O95376 493 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 GJB5O95377 273 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 AVPP01185 164 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 TXNP10599 105 aaKnown RBP12.37□□□□□ -0.43
VPS29-208ENST00000550267 SELPP16109 830 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 EDNRBP24530 442 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 SSTR3P32745 418 aaPredicted RBP12.37□□□□□ -0.43
VPS29-208ENST00000550267 ERVK-21P61565 698 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 CTDSPL2Q05D32 466 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 SYDE2Q5VT97 1194 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 FAM117BQ6P1L5 589 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 RNF207Q6ZRF8 634 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 CAGE1Q8TC20 777 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 SCFD2Q8WU76 684 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 RAD9AQ99638 391 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 GPCPD1Q9NPB8 672 aa12.37□□□□□ -0.43
VPS29-208ENST00000550267 FRMPD2Q68DX3 1309 aaPredicted RBP12.37□□□□□ -0.43
VPS29-208ENST00000550267 NBNO60934 754 aa12.36□□□□□ -0.43
VPS29-208ENST00000550267 NOVP48745 357 aa12.36□□□□□ -0.43
VPS29-208ENST00000550267 MRE11P49959 708 aa12.36□□□□□ -0.43
VPS29-208ENST00000550267 RPS6P62753 249 aaKnown RBP12.36□□□□□ -0.43
VPS29-208ENST00000550267 PTCRAQ6ISU1 281 aaPredicted RBP12.36□□□□□ -0.43
VPS29-208ENST00000550267 BRICD5Q6PL45 260 aa12.36□□□□□ -0.43
VPS29-208ENST00000550267 BTNL9Q6UXG8 535 aa12.36□□□□□ -0.43
VPS29-208ENST00000550267 GPATCH3Q96I76 525 aa12.36□□□□□ -0.43
VPS29-208ENST00000550267 CRBNQ96SW2 442 aa12.36□□□□□ -0.43
VPS29-208ENST00000550267 NCOR1O75376 2440 aa12.36□□□□□ -0.43
VPS29-208ENST00000550267 ABHD14A-ACY1A0A1B0GW23 586 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 FOXP2O15409 715 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 RANBP6O60518 1105 aaKnown RBP12.35□□□□□ -0.43
VPS29-208ENST00000550267 CXCL10P02778 98 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 MMP3P08254 477 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 CKBP12277 381 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 CSPP1Q1MSJ5 1256 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 SESTD1Q86VW0 696 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 CYP4X1Q8N118 509 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 AFG1LQ8WV93 481 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 NLRP7Q8WX94 980 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 KAT2BQ92831 832 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 MPHOSPH6Q99547 160 aaKnown RBP12.35□□□□□ -0.43
VPS29-208ENST00000550267 C17orf80Q9BSJ5 609 aa12.35□□□□□ -0.43
VPS29-208ENST00000550267 ALADP13716 330 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 NHLH1Q02575 133 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 ARHGAP1Q07960 439 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 RBL2Q08999 1139 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 LY6KQ17RY6 165 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 ZMYM1Q5SVZ6 1142 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 CCDC62Q6P9F0 684 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.34□□□□□ -0.43
VPS29-208ENST00000550267 DNERQ8NFT8 737 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 PHOX2BQ99453 314 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 GTF2IRD1Q9UHL9 959 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 TET1Q8NFU7 2136 aa12.34□□□□□ -0.43
VPS29-208ENST00000550267 H3BQ06 376 aaPredicted RBP12.33□□□□□ -0.44
VPS29-208ENST00000550267 PARNO95453 639 aaKnown RBP12.33□□□□□ -0.44
VPS29-208ENST00000550267 GH1P01241 217 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 IKBKEQ14164 716 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 MSS51Q4VC12 460 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 TREML4Q6UXN2 200 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 CHST3Q7LGC8 479 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 NEK9Q8TD19 979 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 WNT8BQ93098 351 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 FBXL18Q96ME1 805 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 TMEM47Q9BQJ4 181 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 ALG1Q9BT22 464 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 FSD1Q9BTV5 496 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 CHMP4BQ9H444 224 aaKnown RBP12.33□□□□□ -0.44
VPS29-208ENST00000550267 HDAC6Q9UBN7 1215 aa12.33□□□□□ -0.44
VPS29-208ENST00000550267 SIP14410 1827 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 DCXO43602 365 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 ORC4O43929 436 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 EFCAB14O75071 495 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 TOP1P11387 765 aaKnown RBP12.32□□□□□ -0.44
VPS29-208ENST00000550267 CASTP20810 708 aaKnown RBP12.32□□□□□ -0.44
VPS29-208ENST00000550267 MBTPS1Q14703 1052 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 CTC1Q2NKJ3 1217 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 TRIM71Q2Q1W2 868 aaKnown RBP12.32□□□□□ -0.44
VPS29-208ENST00000550267 ZNF618Q5T7W0 954 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 LCE2AQ5TA79 106 aaPredicted RBP12.32□□□□□ -0.44
VPS29-208ENST00000550267 VPS53Q5VIR6 699 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 SEPT14Q6ZU15 432 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 C7orf31Q8N865 590 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 ANAPC4Q9UJX5 808 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 WDR19Q8NEZ3 1342 aa12.32□□□□□ -0.44
VPS29-208ENST00000550267 B4DLN1 442 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 PDHBP11177 359 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 MRPL12P52815 198 aaKnown RBP12.31□□□□□ -0.44
VPS29-208ENST00000550267 ZNF200P98182 395 aaPredicted RBP12.31□□□□□ -0.44
VPS29-208ENST00000550267 PTK7Q13308 1070 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 USH1GQ495M9 461 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 RRP12Q5JTH9 1297 aaKnown RBP12.31□□□□□ -0.44
VPS29-208ENST00000550267 MYOCDQ8IZQ8 938 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 PI4K2BQ8TCG2 481 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 TBC1D5Q92609 795 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 ANKS1AQ92625 1134 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 MRPL38Q96DV4 380 aaKnown RBP12.31□□□□□ -0.44
VPS29-208ENST00000550267 TAAR1Q96RJ0 339 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 PRDM9Q9NQV7 894 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 TOMM22Q9NS69 142 aa12.31□□□□□ -0.44
VPS29-208ENST00000550267 INSL6Q9Y581 213 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms