RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 PLCB1Q9NQ66 1216 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 AIPL1Q9NZN9 384 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 THRAP3Q9Y2W1 955 aaKnown RBP9.63□□□□□ -0.87
TDP1-204ENST00000545686 PLIN4Q96Q06 1357 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 GOLGA8HP0CJ92 632 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 ANXA13P27216 316 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 COASYQ13057 564 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 DRP2Q13474 957 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 IFI16Q16666 785 aaKnown RBP9.63□□□□□ -0.87
TDP1-204ENST00000545686 CCDC40Q4G0X9 1142 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 NAA35Q5VZE5 725 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 PPP4R3AQ6IN85 833 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 DYMQ7RTS9 669 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 TRIM59Q8IWR1 403 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 OTUD6BQ8N6M0 293 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 ANKRD13CQ8N6S4 541 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 SNX29Q8TEQ0 813 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 PBKQ96KB5 322 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 CALR3Q96L12 384 aaKnown RBP9.63□□□□□ -0.87
TDP1-204ENST00000545686 RNPC3Q96LT9 517 aaKnown RBP9.63□□□□□ -0.87
TDP1-204ENST00000545686 NLRP3Q96P20 1036 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 LSM14BQ9BX40 385 aaKnown RBP9.63□□□□□ -0.87
TDP1-204ENST00000545686 ISCUQ9H1K1 167 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 TAF1DQ9H5J8 278 aaPredicted RBP9.63□□□□□ -0.87
TDP1-204ENST00000545686 RIOX1Q9H6W3 641 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 KDM3AQ9Y4C1 1321 aa9.63□□□□□ -0.87
TDP1-204ENST00000545686 GOLGA6L10A6NI86 522 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 FAM153BP0C7A2 387 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 KLRC1P26715 233 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 HNRNPH1P31943 449 aaKnown RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 MDH1P40925 334 aaKnown RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 FNTAP49354 379 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 ADCY7P51828 1080 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 MRPS25P82663 173 aaKnown RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 DDB1Q16531 1140 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 SKIDA1Q1XH10 827 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 FAM153CQ494X1 144 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 FAM26FQ5R3K3 315 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 HYIQ5T013 277 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 PPP4R3CPQ6ZMV5 832 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 SH2D3CQ8N5H7 860 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 DNAJC19Q96DA6 116 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 KRT12Q99456 494 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 EYA3Q99504 573 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 NLRC4Q9NPP4 1024 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 FAM153AQ9UHL3 310 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 SAMM50Q9Y512 469 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 GREB1LQ9C091 1923 aaPredicted RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 BHMG1C9JSJ3 638 aaPredicted RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 SLC37A4O43826 429 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 FAM107AO95990 144 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 ITGB3BPQ13352 177 aaPredicted RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 ASIC2Q16515 512 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 SLC4A8Q2Y0W8 1093 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 TTC19Q6DKK2 380 aaPredicted RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 CCDC91Q7Z6B0 441 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 SLC44A5Q8NCS7 719 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 ACTRT1Q8TDG2 376 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 ZNF473Q8WTR7 871 aaKnown RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 IFT81Q8WYA0 676 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 TAF4BQ92750 862 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 LRRC45Q96CN5 670 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 PIGSQ96S52 555 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 NCAPGQ9BPX3 1015 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 NT5C3AQ9H0P0 336 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 TMBIM4Q9HC24 238 aa9.62□□□□□ -0.87
TDP1-204ENST00000545686 A1CFQ9NQ94 594 aaKnown RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 BIN2Q9UBW5 565 aaPredicted RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 BZW2Q9Y6E2 419 aaKnown RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 AHDC1Q5TGY3 1603 aaPredicted RBP9.62□□□□□ -0.87
TDP1-204ENST00000545686 TRAF5O00463 557 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 RAD51CO43502 376 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 FTCDO95954 541 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 CDK8P49336 464 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 ATP1A2P50993 1020 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 USP11P51784 963 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 POLR2FP61218 127 aaKnown RBP9.61□□□□□ -0.87
TDP1-204ENST00000545686 SETQ01105 290 aaPredicted RBP9.61□□□□□ -0.87
TDP1-204ENST00000545686 ATP2B2Q01814 1243 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 BIRC3Q13489 604 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 KIAA0753Q2KHM9 967 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 KCTD16Q68DU8 428 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 KCNV1Q6PIU1 500 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 NLRP14Q86W24 1093 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 TGFBRAP1Q8WUH2 860 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 TBC1D5Q92609 795 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 CABS1Q96KC9 395 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 GANQ9H2C0 597 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 BMP2KQ9NSY1 1161 aaPredicted RBP9.61□□□□□ -0.87
TDP1-204ENST00000545686 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.61□□□□□ -0.87
TDP1-204ENST00000545686 CNTNAP4Q9C0A0 1308 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 ESYT3A0FGR9 886 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 ZSCAN5CA6NGD5 496 aaPredicted RBP9.61□□□□□ -0.87
TDP1-204ENST00000545686 POTEMA6NI47 508 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 TDP2O95551 362 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 GCFC2P16383 781 aaKnown RBP9.61□□□□□ -0.87
TDP1-204ENST00000545686 DDR1Q08345 913 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 KLHL30Q0D2K2 578 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 MTMR3Q13615 1198 aa9.61□□□□□ -0.87
TDP1-204ENST00000545686 RPS6KA1Q15418 735 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms