RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 CEP55Q53EZ4 464 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 C9orf50Q5SZB4 431 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 DTHD1Q6ZMT9 781 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 CCDC73Q6ZRK6 1079 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 PLEKHH3Q7Z736 793 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 NLRX1Q86UT6 975 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 USP6NLQ92738 828 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 SYAP1Q96A49 352 aaPredicted RBP10.75□□□□□ -0.69
YBX3-215ENST00000544504 CDHR1Q96JP9 859 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 PGBD1Q96JS3 809 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 AK8Q96MA6 479 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 TAAR1Q96RJ0 339 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 PDCD2LQ9BRP1 358 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 PYM1Q9BRP8 204 aaKnown RBP10.75□□□□□ -0.69
YBX3-215ENST00000544504 ANP32EQ9BTT0 268 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 FTOQ9C0B1 505 aaKnown RBP eCLIP10.75□□□□□ -0.69
YBX3-215ENST00000544504 STK24Q9Y6E0 443 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 SMCHD1A6NHR9 2005 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 SLC15A5A6NIM6 579 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 DNM1LO00429 736 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 MSCO60682 206 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 TDP2O95551 362 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 NR3C2P08235 984 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 CMA1P23946 247 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 TXLNAP40222 546 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 ATN1P54259 1190 aaPredicted RBP10.74□□□□□ -0.69
YBX3-215ENST00000544504 RTP1P59025 263 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 NBR1Q14596 966 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 PGM5Q15124 567 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 ZNF467Q7Z7K2 595 aaPredicted RBP10.74□□□□□ -0.69
YBX3-215ENST00000544504 FAM133AQ8N9E0 248 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 CCDC34Q96HJ3 373 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 APBA2Q99767 749 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 MXRA8Q9BRK3 442 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 FAM13BQ9NYF5 915 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 COL20A1Q9P218 1284 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 PCDHA7Q9UN72 937 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 DIS3Q9Y2L1 958 aaKnown RBP10.74□□□□□ -0.69
YBX3-215ENST00000544504 DDX49Q9Y6V7 483 aaKnown RBP10.74□□□□□ -0.69
YBX3-215ENST00000544504 MYH7BA7E2Y1 1941 aa10.74□□□□□ -0.69
YBX3-215ENST00000544504 BDP1A6H8Y1 2624 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 DNAJC25-GNG10A0A024R161 153 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 ASB14A6NK59 587 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 MEIS1O00470 390 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 SLC26A4O43511 780 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 EIF3JO75822 258 aaKnown RBP10.73□□□□□ -0.69
YBX3-215ENST00000544504 EIF2AK2P19525 551 aaKnown RBP10.73□□□□□ -0.69
YBX3-215ENST00000544504 MARCKSP29966 332 aaPredicted RBP10.73□□□□□ -0.69
YBX3-215ENST00000544504 ALDH5A1P51649 535 aaPredicted RBP10.73□□□□□ -0.69
YBX3-215ENST00000544504 PDE4DQ08499 809 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 PDIA5Q14554 519 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 STXBP2Q15833 593 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 CCL14Q16627 93 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 PRR16Q569H4 304 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 MORN1Q5T089 497 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 GPR142Q7Z601 462 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 VSIG10LQ86VR7 867 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 PLA2G4DQ86XP0 818 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 MSL3Q8N5Y2 521 aaKnown RBP10.73□□□□□ -0.69
YBX3-215ENST00000544504 C4orf32Q8N8J7 132 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 USP38Q8NB14 1042 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 ATXN2LQ8WWM7 1075 aaKnown RBP10.73□□□□□ -0.69
YBX3-215ENST00000544504 MRPS27Q92552 414 aaKnown RBP10.73□□□□□ -0.69
YBX3-215ENST00000544504 GPRASP2Q96D09 838 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 CHAMP1Q96JM3 812 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 MTMR9Q96QG7 549 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 PORCNQ9H237 461 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 TCEAL9Q9UHQ7 104 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 FBXO2Q9UK22 296 aaPredicted RBP10.73□□□□□ -0.69
YBX3-215ENST00000544504 ATP11BQ9Y2G3 1177 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 UBIAD1Q9Y5Z9 338 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 DOCK3Q8IZD9 2030 aa10.73□□□□□ -0.69
YBX3-215ENST00000544504 VWA3AA6NCI4 1184 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 MYCLP12524 364 aaPredicted RBP10.72□□□□□ -0.69
YBX3-215ENST00000544504 FXR2P51116 673 aaKnown RBP eCLIP10.72□□□□□ -0.69
YBX3-215ENST00000544504 GRB14Q14449 540 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 KLHL40Q2TBA0 621 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 AXDND1Q5T1B0 1012 aaPredicted RBP10.72□□□□□ -0.69
YBX3-215ENST00000544504 MFSD14CQ5VZR4 134 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 KCNV1Q6PIU1 500 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 DPP9Q86TI2 863 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 POTEDQ86YR6 584 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 GIMAP8Q8ND71 665 aaPredicted RBP10.72□□□□□ -0.69
YBX3-215ENST00000544504 BADQ92934 168 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 WDR11Q9BZH6 1224 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 KCNMB3Q9NPA1 279 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 JADE2Q9NQC1 790 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 DDX20Q9UHI6 824 aaKnown RBP10.72□□□□□ -0.69
YBX3-215ENST00000544504 PCDHA12Q9UN75 941 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 PLXNB2O15031 1838 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 ZNF236Q9UL36 1845 aa10.72□□□□□ -0.69
YBX3-215ENST00000544504 IGLV3-22A0A075B6J6 115 aa10.71□□□□□ -0.69
YBX3-215ENST00000544504 FAM86B1E9PN63 330 aa10.71□□□□□ -0.69
YBX3-215ENST00000544504 WNT7AO00755 349 aa10.71□□□□□ -0.69
YBX3-215ENST00000544504 SLC37A4O43826 429 aa10.71□□□□□ -0.69
YBX3-215ENST00000544504 TRAK2O60296 914 aa10.71□□□□□ -0.69
YBX3-215ENST00000544504 FAM86B2P0C5J1 330 aa10.71□□□□□ -0.69
YBX3-215ENST00000544504 TGFB3P10600 412 aa10.71□□□□□ -0.69
YBX3-215ENST00000544504 EDNRBP24530 442 aa10.71□□□□□ -0.69
YBX3-215ENST00000544504 ADORA2AP29274 412 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms