RNA–Protein interactions for RNA: ENST00000542841.1

SRGAP1-205, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 836 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-205ENST00000542841 ALDH5A1P51649 535 aaPredicted RBP13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 PTPN11Q06124 597 aaPredicted RBP13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 SSRP1Q08945 709 aaKnown RBP13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 PKP1Q13835 747 aa13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 SCN5AQ14524 2016 aa13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 GRM4Q14833 912 aa13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 PWP2Q15269 919 aaKnown RBP13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 NFKBIBQ15653 356 aa13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 ALYREFQ86V81 257 aaKnown RBP13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 FAM177A1Q8N128 213 aaPredicted RBP13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 PURBQ96QR8 312 aaKnown RBP13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 TMEM47Q9BQJ4 181 aa13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 ZBED2Q9BTP6 218 aa13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 ZSCAN16Q9H4T2 348 aaPredicted RBP13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 STX8Q9UNK0 236 aa13.26□□□□□ -0.29
SRGAP1-205ENST00000542841 RBM47A0AV96 593 aaKnown RBP13.25□□□□□ -0.29
SRGAP1-205ENST00000542841 H3BQV1 296 aa13.25□□□□□ -0.29
SRGAP1-205ENST00000542841 NKRFO15226 690 aaKnown RBP eCLIP13.25□□□□□ -0.29
SRGAP1-205ENST00000542841 FDPSP14324 419 aaKnown RBP13.25□□□□□ -0.29
SRGAP1-205ENST00000542841 BAATQ14032 418 aaPredicted RBP13.25□□□□□ -0.29
SRGAP1-205ENST00000542841 TMTC3Q6ZXV5 915 aa13.25□□□□□ -0.29
SRGAP1-205ENST00000542841 CCDC155Q8N6L0 562 aa13.25□□□□□ -0.29
SRGAP1-205ENST00000542841 GDPD5Q8WTR4 605 aa13.25□□□□□ -0.29
SRGAP1-205ENST00000542841 MYL10Q9BUA6 226 aa13.25□□□□□ -0.29
SRGAP1-205ENST00000542841 CD320Q9NPF0 282 aa13.25□□□□□ -0.29
SRGAP1-205ENST00000542841 TCHHQ07283 1943 aa13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 LCHNA4D1U4 455 aa13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 VPS37CA5D8V6 355 aaPredicted RBP13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 PRPF3O43395 683 aaKnown RBP13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 BAG4O95429 457 aaKnown RBP13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 RXRAP19793 462 aa13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 MCM4P33991 863 aa13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 WDR5P61964 334 aaKnown RBP13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 AKAP17AQ02040 695 aaKnown RBP13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 SPRED2Q7Z698 418 aa13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 RAB11FIP4Q86YS3 637 aa13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 GJD3Q8N144 294 aa13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 PPP1R13LQ8WUF5 828 aa13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 C8orf76Q96K31 380 aa13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 MPHOSPH6Q99547 160 aaKnown RBP13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 UBE2ZQ9H832 354 aaPredicted RBP13.24□□□□□ -0.29
SRGAP1-205ENST00000542841 PALM3A6NDB9 673 aaPredicted RBP13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 A6NJR5 290 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 SNHG28P0DPA3 235 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 XBP1P17861 261 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 CHMP4BP1P59074 171 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 PDE4DQ08499 809 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 FUT2Q10981 343 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 PTGISQ16647 500 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 ASPRV1Q53RT3 343 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 FAM178BQ8IXR5 827 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 FBXO18Q8NFZ0 1043 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 CAGE1Q8TC20 777 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 AFAP1L1Q8TED9 768 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 SCFD2Q8WU76 684 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 SLC26A6Q9BXS9 759 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 MTUS1Q9ULD2 1270 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 TANC1Q9C0D5 1861 aa13.23□□□□□ -0.29
SRGAP1-205ENST00000542841 CNTNAP5Q8WYK1 1306 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 SCN10AQ9Y5Y9 1956 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 NFIBO00712 420 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 PARNO95453 639 aaKnown RBP13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 PARP1P09874 1014 aaKnown RBP13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 ALADP13716 330 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 KCNA5P22460 613 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 CALML3P27482 149 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 SSTR3P32745 418 aaPredicted RBP13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 TRIM29Q14134 588 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 CSPP1Q1MSJ5 1256 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 CCDC96Q2M329 555 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 LEXMQ3ZCV2 418 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 GPATCH4Q5T3I0 446 aaKnown RBP13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 ATL3Q6DD88 541 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 CNKSR3Q6P9H4 555 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 TMCO2Q7Z6W1 182 aaPredicted RBP13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 UIMC1Q96RL1 719 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 TGS1Q96RS0 853 aaKnown RBP13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 RAD9AQ99638 391 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 ALG1Q9BT22 464 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 SPZ1Q9BXG8 430 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 RANBP17Q9H2T7 1088 aaKnown RBP13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 SUGCTQ9HAC7 445 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 MAD2L2Q9UI95 211 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 MTMR7Q9Y216 660 aa13.22□□□□□ -0.29
SRGAP1-205ENST00000542841 COL4A4P53420 1690 aaPredicted RBP13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 LCTP09848 1927 aa13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 B4DLN1 442 aa13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 GJB5O95377 273 aa13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 TXNP10599 105 aaKnown RBP13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 SELPP16109 830 aa13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 MRPL12P52815 198 aaKnown RBP13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 ERVK-21P61565 698 aa13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 DEFB103AP81534 67 aa13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 SLC30A10Q6XR72 485 aa13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 RNF207Q6ZRF8 634 aa13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 DCAF4Q8WV16 495 aa13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 COPS5Q92905 334 aa13.21□□□□□ -0.29
SRGAP1-205ENST00000542841 PHKBQ93100 1093 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms