RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 LIFRP42702 1097 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 CTCFP49711 727 aaPredicted RBP12.19□□□□□ -0.46
CDH3-203ENST00000542274 CCDC144BQ3MJ40 725 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 SHISA4Q96DD7 197 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 NR1H4Q96RI1 486 aaPredicted RBP12.19□□□□□ -0.46
CDH3-203ENST00000542274 CARD6Q9BX69 1037 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 KRT23Q9C075 422 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 JADE2Q9NQC1 790 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 SLC5A4Q9NY91 659 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 HOOK1Q9UJC3 728 aaKnown RBP12.19□□□□□ -0.46
CDH3-203ENST00000542274 HMGB2P26583 209 aaKnown RBP12.19□□□□□ -0.46
CDH3-203ENST00000542274 ATICP31939 592 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 CSE1LP55060 971 aaKnown RBP12.19□□□□□ -0.46
CDH3-203ENST00000542274 LRP8Q14114 963 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 DIXDC1Q155Q3 683 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 FAM47AQ5JRC9 791 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 C2CD5Q86YS7 1000 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 PIDD1Q9HB75 910 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 LRRC37AA6NMS7 1700 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 BTBD18B2RXH4 712 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 SPTLC2O15270 562 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 EVI5O60447 810 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 NPR1P16066 1061 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 TUFMP49411 452 aaKnown RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 ZNF165P49910 485 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 BPIFB4P59827 614 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 NR5A1Q13285 461 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 DYNC1I2Q13409 638 aaKnown RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 ARHGEF6Q15052 776 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 SPECC1Q5M775 1068 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 ZCCHC8Q6NZY4 707 aaKnown RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 HDXQ7Z353 690 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 ZNF804AQ7Z570 1209 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 ZNF654Q8IZM8 581 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 DHTKD1Q96HY7 919 aaPredicted RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 C2orf49Q9BVC5 232 aaPredicted RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 VCPKMTQ9H867 229 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 CNNM2Q9H8M5 875 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 GMEB1Q9Y692 573 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 ECM29Q5VYK3 1845 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 SLX4Q8IY92 1834 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 MYH2Q9UKX2 1941 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 LTBP1Q14766 1721 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 A6NHS1 94 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 LIN7AO14910 233 aaPredicted RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 PDGFRBP09619 1106 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 ATP2B4P23634 1241 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 TCF7P36402 384 aaPredicted RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 RTN1Q16799 776 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 SHROOM1Q2M3G4 852 aaPredicted RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 ANO1Q5XXA6 986 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 SPATS2Q86XZ4 545 aaKnown RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 FMR1NBQ8N0W7 255 aaPredicted RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 ENAHQ8N8S7 591 aaPredicted RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 SRPK1Q96SB4 655 aaKnown RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 ABCF3Q9NUQ8 709 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 EFR3BQ9Y2G0 817 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 TMED5Q9Y3A6 229 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 ATP6V0A2Q9Y487 856 aa12.18□□□□□ -0.46
CDH3-203ENST00000542274 BAZ2BQ9UIF8 2168 aaKnown RBP12.18□□□□□ -0.46
CDH3-203ENST00000542274 CCDC151A5D8V7 595 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 PALM3A6NDB9 673 aaPredicted RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 TMEM247A6NEH6 219 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 TMEM110-MUSTN1A8MSY1 372 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 SEMA3EO15041 775 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 ARHGAP25P42331 645 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 HALP42357 657 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 POU5F1Q01860 360 aaKnown RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 FAM160A1Q05DH4 1040 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 MYO1EQ12965 1108 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 OXER1Q8TDS5 423 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 MRPS27Q92552 414 aaKnown RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 UBAC1Q9BSL1 405 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.17□□□□□ -0.46
CDH3-203ENST00000542274 TRIM5Q9C035 493 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 CD209Q9NNX6 404 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 BICDL2A1A5D9 508 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 FAM205CA6NFA0 338 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 BIN1O00499 593 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 MEFVO15553 781 aaPredicted RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 PLEKHA8P1O95397 391 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 USP17L8P0C7I0 530 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 HSPA8P11142 646 aaKnown RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 PSMD7P51665 324 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 GRIN1Q05586 938 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 SSRP1Q08945 709 aaKnown RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 SEC23AQ15436 765 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 CYB5D1Q6P9G0 228 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 TIAM2Q8IVF5 1701 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 ZNF713Q8N859 430 aaPredicted RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 BCAS4Q8TDM0 211 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 DYDC1Q8WWB3 177 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 ZMAT2Q96NC0 199 aaKnown RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 DCP1AQ9NPI6 582 aaPredicted RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 LUC7LQ9NQ29 371 aaKnown RBP12.17□□□□□ -0.46
CDH3-203ENST00000542274 POLR3EQ9NVU0 708 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 WDR35Q9P2L0 1181 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 ATXN10Q9UBB4 475 aa12.17□□□□□ -0.46
CDH3-203ENST00000542274 DUOX1Q9NRD9 1551 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms