RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 POLR2MP0CAP2 368 aa17.93■□□□□ 0.46
CLSTN3-213ENST00000541953 CCND2P30279 289 aa17.93■□□□□ 0.46
CLSTN3-213ENST00000541953 AAMPQ13685 434 aa17.93■□□□□ 0.46
CLSTN3-213ENST00000541953 PLEKHG4Q58EX7 1191 aa17.93■□□□□ 0.46
CLSTN3-213ENST00000541953 TTC22Q5TAA0 569 aa17.93■□□□□ 0.46
CLSTN3-213ENST00000541953 MYOCDQ8IZQ8 938 aa17.93■□□□□ 0.46
CLSTN3-213ENST00000541953 RNPEPQ9H4A4 650 aa17.93■□□□□ 0.46
CLSTN3-213ENST00000541953 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 RSPH10B2B2RC85 870 aa17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 H3BRB1 525 aa17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 IFIT3O14879 490 aaKnown RBP17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 RSPH10BP0C881 870 aa17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 HTRA4P83105 476 aaPredicted RBP17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 SP7Q8TDD2 431 aaPredicted RBP17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 ATP6V0A1Q93050 837 aa17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 LRFN3Q9BTN0 628 aa17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 MYL10Q9BUA6 226 aa17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 TUT1Q9H6E5 874 aaKnown RBP17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 UBE2ZQ9H832 354 aaPredicted RBP17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 MLXIPQ9HAP2 919 aa17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 RTEL1Q9NZ71 1219 aa17.92■□□□□ 0.46
CLSTN3-213ENST00000541953 COL4A6Q14031 1691 aa17.91■□□□□ 0.46
CLSTN3-213ENST00000541953 C17orf102A2RUQ5 167 aa17.91■□□□□ 0.46
CLSTN3-213ENST00000541953 FAM86C2PA6NEL3 165 aa17.91■□□□□ 0.46
CLSTN3-213ENST00000541953 E7EWF7 191 aa17.91■□□□□ 0.46
CLSTN3-213ENST00000541953 CYFIP1Q7L576 1253 aa17.91■□□□□ 0.46
CLSTN3-213ENST00000541953 INPP4AQ96PE3 977 aaPredicted RBP17.91■□□□□ 0.46
CLSTN3-213ENST00000541953 SETD4Q9NVD3 440 aa17.91■□□□□ 0.46
CLSTN3-213ENST00000541953 MAP3K20Q9NYL2 800 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-213ENST00000541953 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 PNMA6FA0A0J9YX94 578 aa17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 CHMLP26374 656 aa17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 PLA2G5P39877 138 aa17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 SP4Q02446 784 aa17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 KCNV1Q6PIU1 500 aa17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 USP17L6PQ6QN14 398 aa17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 MB21D2Q8IYB1 491 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 GPR20Q99678 358 aa17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 LMCD1Q9NZU5 365 aa17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 TRIOO75962 3097 aa17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 WDFY4Q6ZS81 3184 aa17.9■□□□□ 0.46
CLSTN3-213ENST00000541953 SPATA31C2B4DYI2 1134 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 EFCAB14O75071 495 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 TGFB3P10600 412 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 IL9P15248 144 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 ICAM3P32942 547 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 ADAM17P78536 824 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 WTAPQ15007 396 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 FBXO22Q8NEZ5 403 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 LMBR1Q8WVP7 490 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 C1QTNF1Q9BXJ1 281 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 INSL6Q9Y581 213 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 EMSYQ7Z589 1322 aa17.89■□□□□ 0.45
CLSTN3-213ENST00000541953 MYO7AQ13402 2215 aa17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 UPP2O95045 317 aa17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 AMHP03971 560 aa17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 KCNA5P22460 613 aa17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 EPC2Q52LR7 807 aa17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 UTP14CQ5TAP6 766 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 METTL7BQ6UX53 244 aa17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 RUFY4Q6ZNE9 571 aa17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 CMTR1Q8N1G2 835 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 IGDCC4Q8TDY8 1250 aa17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 RALGAPA2Q2PPJ7 1873 aa17.88■□□□□ 0.45
CLSTN3-213ENST00000541953 NOP56O00567 594 aaKnown RBP17.87■□□□□ 0.45
CLSTN3-213ENST00000541953 MEIS2O14770 477 aa17.87■□□□□ 0.45
CLSTN3-213ENST00000541953 ATP9AO75110 1047 aa17.87■□□□□ 0.45
CLSTN3-213ENST00000541953 PLEKHA8P1O95397 391 aa17.87■□□□□ 0.45
CLSTN3-213ENST00000541953 TRDNQ13061 729 aa17.87■□□□□ 0.45
CLSTN3-213ENST00000541953 SAMD3Q8N6K7 520 aa17.87■□□□□ 0.45
CLSTN3-213ENST00000541953 TOP1MTQ969P6 601 aa17.87■□□□□ 0.45
CLSTN3-213ENST00000541953 ZBTB10Q96DT7 871 aa17.87■□□□□ 0.45
CLSTN3-213ENST00000541953 LY9Q9HBG7 655 aa17.87■□□□□ 0.45
CLSTN3-213ENST00000541953 U3KPZ7 1027 aaPredicted RBP17.87■□□□□ 0.45
CLSTN3-213ENST00000541953 SGSM2O43147 1006 aa17.86■□□□□ 0.45
CLSTN3-213ENST00000541953 LINC00271P0C7V0 271 aa17.86■□□□□ 0.45
CLSTN3-213ENST00000541953 RXRAP19793 462 aa17.86■□□□□ 0.45
CLSTN3-213ENST00000541953 RALYLQ86SE5 291 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-213ENST00000541953 RAB11FIP4Q86YS3 637 aa17.86■□□□□ 0.45
CLSTN3-213ENST00000541953 NCOA7Q8NI08 942 aa17.86■□□□□ 0.45
CLSTN3-213ENST00000541953 hCG_1642624A0A1W2PR95 340 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 H3BQ06 376 aaPredicted RBP17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 FIBPO43427 364 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 CHRNA1P02708 482 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 ARHGAP4P98171 946 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 GNPTABQ3T906 1256 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 LEXMQ3ZCV2 418 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 FAM178BQ8IXR5 827 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 ZNF654Q8IZM8 581 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 SEPT8Q92599 483 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 MRPL38Q96DV4 380 aaKnown RBP17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 YME1L1Q96TA2 773 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 SPZ1Q9BXG8 430 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 USP26Q9BXU7 913 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 KIAA1671Q9BY89 1806 aa17.85■□□□□ 0.45
CLSTN3-213ENST00000541953 KCNA2P16389 499 aa17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 NEDD9Q14511 834 aa17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 TCEAL5Q5H9L2 206 aa17.84■□□□□ 0.45
CLSTN3-213ENST00000541953 FAM26DQ5JW98 314 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms