RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 SPATA20Q8TB22 786 aa15.89■□□□□ 0.13
SFSWAP-210ENST00000541286 JPH2Q9BR39 696 aaPredicted RBP15.89■□□□□ 0.13
SFSWAP-210ENST00000541286 YY1AP1Q9H869 796 aa15.89■□□□□ 0.13
SFSWAP-210ENST00000541286 PPP1R11O60927 126 aaPredicted RBP15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 GJA5P36382 358 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 CDKAL1Q5VV42 579 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 TADA2BQ86TJ2 420 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 CEP112Q8N8E3 955 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 ZIC5Q96T25 663 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 PSEN1P49768 467 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 ATP2C1P98194 919 aaPredicted RBP15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 TCP11X2Q5H9J9 407 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 TREML2Q5T2D2 321 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 CPXCR1Q8N123 301 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 CAGE1Q8TC20 777 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 HOMER2Q9NSB8 354 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 EMILIN3Q9NT22 766 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 MAGEC2Q9UBF1 373 aaPredicted RBP15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 CNTNAP5Q8WYK1 1306 aa15.88■□□□□ 0.13
SFSWAP-210ENST00000541286 TRIM21P19474 475 aaKnown RBP15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 PMS1P54277 932 aaKnown RBP15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 CYP26C1Q6V0L0 522 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 PNMA8AQ86V59 439 aaPredicted RBP15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 TMTC1Q8IUR5 882 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 AFAP1L1Q8TED9 768 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 PICK1Q9NRD5 415 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 TTC26A0AVF1 554 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 MACROD2A1Z1Q3 448 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 BMP15O95972 392 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 ASNSP08243 561 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 CALM1P0DP23 149 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 CALM2P0DP24 149 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 CALM3P0DP25 149 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 CCDC122Q5T0U0 273 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 DTHD1Q6ZMT9 781 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 ADGRF4Q8IZF3 695 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 HPS3Q969F9 1004 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 CCDC17Q96LX7 622 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 PSMB7Q99436 277 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 TANGO6Q9C0B7 1094 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 CENPHQ9H3R5 247 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 LUC7L2Q9Y383 392 aaKnown RBP15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 B4DLN1 442 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 PPP1R12BO60237 982 aaPredicted RBP15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 MAP2K2P36507 400 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 NPY5RQ15761 445 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 SUPT20HL1Q3ZLR7 823 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 SH3RF1Q7Z6J0 888 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 BLIDQ8IZY5 108 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 TCP11L1Q9NUJ3 509 aa15.87■□□□□ 0.13
SFSWAP-210ENST00000541286 GTPBP6O43824 516 aaPredicted RBP15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 ITGBL1O95965 494 aaPredicted RBP15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 PCP11498 1178 aaKnown RBP15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 GGCXP38435 758 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 KLK7P49862 253 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 CYP27A1Q02318 531 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 LETM2Q2VYF4 491 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 SCYL3Q8IZE3 742 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 NAA15Q9BXJ9 866 aaKnown RBP15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 TMEM60Q9H2L4 133 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 EPN1Q9Y6I3 576 aaPredicted RBP15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 PALM3A6NDB9 673 aaPredicted RBP15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 KIF3CO14782 793 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 DNA2P51530 1060 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 ZNF543Q08ER8 600 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 GRM4Q14833 912 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 TBC1D5Q92609 795 aa15.86■□□□□ 0.13
SFSWAP-210ENST00000541286 MYO1FO00160 1098 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 CTNND1O60716 968 aaKnown RBP15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 YY1P25490 414 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 MATR3P43243 847 aaKnown RBP eCLIP15.85■□□□□ 0.133e-6■■■■□ 20.4
SFSWAP-210ENST00000541286 MCTP2Q6DN12 878 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 MMS22LQ6ZRQ5 1243 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 ELOA2Q8IYF1 753 aaPredicted RBP15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 PURBQ96QR8 312 aaKnown RBP15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 JMJD4Q9H9V9 463 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 H0YHG0 523 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 TBC1D12O60347 775 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 IPO7O95373 1038 aaKnown RBP15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 SYF2O95926 243 aaKnown RBP15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 HNRNPH1P31943 449 aaKnown RBP15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 MAP3K10Q02779 954 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 OPTNQ96CV9 577 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 MYO6Q9UM54 1294 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 FRMD3A2A2Y4 597 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 MTIF2P46199 727 aaKnown RBP15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 DCAF15Q66K64 600 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 PDXDC2PQ6P474 469 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 KIRREL3Q8IZU9 778 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 JADE2Q9NQC1 790 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 RWDD2AQ9UIY3 292 aa15.85■□□□□ 0.13
SFSWAP-210ENST00000541286 PPFIA4O75335 1185 aa15.84■□□□□ 0.13
SFSWAP-210ENST00000541286 VCAM1P19320 739 aa15.84■□□□□ 0.13
SFSWAP-210ENST00000541286 KIF5BP33176 963 aa15.84■□□□□ 0.13
SFSWAP-210ENST00000541286 SPAG1Q07617 926 aa15.84■□□□□ 0.13
SFSWAP-210ENST00000541286 PPP2R5BQ15173 497 aa15.84■□□□□ 0.13
SFSWAP-210ENST00000541286 ZNF658Q5TYW1 1059 aaPredicted RBP15.84■□□□□ 0.13
SFSWAP-210ENST00000541286 GADL1Q6ZQY3 521 aa15.84■□□□□ 0.13
SFSWAP-210ENST00000541286 CSGALNACT2Q8N6G5 542 aa15.84■□□□□ 0.13
SFSWAP-210ENST00000541286 BCAS4Q8TDM0 211 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms