RNA–Protein interactions for RNA: ENST00000540166.5

DDB1-217, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 3,906 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-217ENST00000540166 CPA4Q9UI42 421 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 SMIM24O75264 130 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 RASGRF1Q13972 1273 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 RTN1Q16799 776 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 NR2E3Q9Y5X4 410 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 PPP6R2O75170 966 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 ENTPD3O75355 529 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 NDUFA10O95299 355 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 PDHBP11177 359 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 RFX5P48382 616 aaPredicted RBP9.55□□□□□ -0.88
DDB1-217ENST00000540166 MECOMQ03112 1051 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 PSMD2Q13200 908 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 WTAPQ15007 396 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 PLCB4Q15147 1175 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 CDC42EP5Q6NZY7 148 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 C15orf52Q6ZUT6 534 aaKnown RBP9.55□□□□□ -0.88
DDB1-217ENST00000540166 CERS5Q8N5B7 392 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 CD99L2Q8TCZ2 262 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 TRIM47Q96LD4 638 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 CTNND2Q9UQB3 1225 aa9.55□□□□□ -0.88
DDB1-217ENST00000540166 QSER1Q2KHR3 1735 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 USP17L5A8MUK1 530 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 SEC24CP53992 1094 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 FOXP4Q8IVH2 680 aaPredicted RBP9.54□□□□□ -0.88
DDB1-217ENST00000540166 GRAMD1CQ8IYS0 662 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 CMTR1Q8N1G2 835 aaKnown RBP9.54□□□□□ -0.88
DDB1-217ENST00000540166 ZNF296Q8WUU4 475 aaPredicted RBP9.54□□□□□ -0.88
DDB1-217ENST00000540166 TUBGCP6Q96RT7 1819 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 CACNA1FO60840 1977 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 PRPF6O94906 941 aaKnown RBP9.54□□□□□ -0.88
DDB1-217ENST00000540166 ATP1A1P05023 1023 aaKnown RBP9.54□□□□□ -0.88
DDB1-217ENST00000540166 PCK1P35558 622 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 VGLL4Q14135 290 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 RUFY4Q6ZNE9 571 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 TMEM139Q8IV31 216 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 STAMQ92783 540 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 SAMD15Q9P1V8 674 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 SETSIPP0DME0 302 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 PSMC4P43686 418 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 LACTBP83111 547 aaPredicted RBP9.54□□□□□ -0.88
DDB1-217ENST00000540166 TRAF1Q13077 416 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 SLMAPQ14BN4 828 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 CERKLQ49MI3 558 aaPredicted RBP9.54□□□□□ -0.88
DDB1-217ENST00000540166 TMED8Q6PL24 325 aaPredicted RBP9.54□□□□□ -0.88
DDB1-217ENST00000540166 APOA5Q6Q788 366 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 SHC4Q6S5L8 630 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 TMEM87BQ96K49 555 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 TSGA10Q9BZW7 698 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 NBPF3Q9H094 633 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 CCDC113Q9H0I3 377 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 ETAA1Q9NY74 926 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 SWAP70Q9UH65 585 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 ZMYM6O95789 1325 aa9.54□□□□□ -0.88
DDB1-217ENST00000540166 KIAA0100Q14667 2235 aaKnown RBP9.53□□□□□ -0.88
DDB1-217ENST00000540166 PDE4BQ07343 736 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 TBX2Q13207 712 aaPredicted RBP9.53□□□□□ -0.88
DDB1-217ENST00000540166 RILPL1Q5EBL4 403 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 DPP9Q86TI2 863 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 ATP6V0A4Q9HBG4 840 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 GPR108Q9NPR9 543 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 SAGE1Q9NXZ1 904 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 KCNH4Q9UQ05 1017 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 SLC4A4Q9Y6R1 1079 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 CCDC189A1A4V9 331 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 SHOX2O60902 331 aaPredicted RBP9.53□□□□□ -0.88
DDB1-217ENST00000540166 LUC7L3O95232 432 aaKnown RBP9.53□□□□□ -0.88
DDB1-217ENST00000540166 CASP7P55210 303 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 MXRA7P84157 204 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 CTDSPL2Q05D32 466 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 NR1I3Q14994 352 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 CCDC178Q5BJE1 867 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 FBXO46Q6PJ61 603 aaPredicted RBP9.53□□□□□ -0.88
DDB1-217ENST00000540166 LMNTD2Q8IXW0 634 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 RNF208Q9H0X6 261 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 ABHD10Q9NUJ1 306 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 NOP53Q9NZM5 478 aaKnown RBP9.53□□□□□ -0.88
DDB1-217ENST00000540166 PDHXO00330 501 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 SNUPNO95149 360 aaKnown RBP9.53□□□□□ -0.88
DDB1-217ENST00000540166 TRIM68Q6AZZ1 485 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 METTL16Q86W50 562 aaKnown RBP9.53□□□□□ -0.88
DDB1-217ENST00000540166 IFNL1Q8IU54 200 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 NOSTRINQ8IVI9 506 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 ARL8AQ96BM9 186 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 TSC22D3Q99576 134 aa9.53□□□□□ -0.88
DDB1-217ENST00000540166 RFX7Q2KHR2 1363 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 FAM196BA6NMK8 535 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 GDF11O95390 407 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 KRT14P02533 472 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 SLC8A3P57103 927 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 ATP11AP98196 1134 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 PPATQ06203 517 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 GNPTABQ3T906 1256 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 ATG9AQ7Z3C6 839 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 TRIM58Q8NG06 486 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 NSMCE1Q8WV22 266 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 GMLQ99445 158 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 PGAP2Q9UHJ9 254 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 PCDHAC2Q9Y5I4 1007 aa9.52□□□□□ -0.88
DDB1-217ENST00000540166 COL5A3P25940 1745 aaPredicted RBP9.52□□□□□ -0.89
DDB1-217ENST00000540166 MROH7-TTC4A0A0A0MT08 1334 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms