RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 IQCA1LA6NCM1 817 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 KRIT1O00522 736 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 COL6A2P12110 1019 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 ZNF827Q17R98 1081 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 CYP4F22Q6NT55 531 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 BORAQ6PGQ7 559 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 RSPO2Q6UXX9 243 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-213ENST00000539950 NSMFQ6X4W1 530 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 OTOP3Q7RTS5 596 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 FAM124AQ86V42 546 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 PROSER1Q86XN7 944 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 ST13P5Q8NFI4 369 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-213ENST00000539950 DCAF4Q8WV16 495 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 LCORQ96JN0 433 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-213ENST00000539950 YTHDC1Q96MU7 727 aaKnown RBP5.71□□□□□ -1.5
VPS13A-213ENST00000539950 KCNJ15Q99712 375 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 L2HGDHQ9H9P8 463 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 SMPD4Q9NXE4 827 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 CROTQ9UKG9 612 aa5.71□□□□□ -1.5
VPS13A-213ENST00000539950 C9orf118A6NHY6 69 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 MAFKO60675 156 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 LTFP02788 710 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 CYP1A1P04798 512 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-213ENST00000539950 INSRRP14616 1297 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 GRK2P25098 689 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 GRK3P35626 688 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 ZXDCQ2QGD7 858 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-213ENST00000539950 PHF19Q5T6S3 580 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 MBD6Q96DN6 1003 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 LOXL4Q96JB6 756 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 TMEM209Q96SK2 561 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 SSBP3Q9BWW4 388 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-213ENST00000539950 KRTAP3-1Q9BYR8 98 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 HSPBP1Q9NZL4 362 aa5.7□□□□□ -1.5
VPS13A-213ENST00000539950 ASXL2Q76L83 1435 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 TRAV20A0A0B4J274 112 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 NKRFO15226 690 aaKnown RBP eCLIP5.69□□□□□ -1.5
VPS13A-213ENST00000539950 ADAM17P78536 824 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 KIZQ2M2Z5 673 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 STYK1Q6J9G0 422 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 LIMS2Q7Z4I7 341 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 TRIM48Q8IWZ4 208 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 TTLL11Q8NHH1 800 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 BORCS6Q96GS4 357 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 C8orf49Q96NF6 230 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 TRIM55Q9BYV6 548 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 TMEM168Q9H0V1 697 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 TELO2Q9Y4R8 837 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 ZNF536O15090 1300 aa5.69□□□□□ -1.5
VPS13A-213ENST00000539950 GNAT1P11488 350 aa5.68□□□□□ -1.5
VPS13A-213ENST00000539950 COL6A1P12109 1028 aa5.68□□□□□ -1.5
VPS13A-213ENST00000539950 GPR85P60893 370 aa5.68□□□□□ -1.5
VPS13A-213ENST00000539950 TUSC3Q13454 348 aa5.68□□□□□ -1.5
VPS13A-213ENST00000539950 HABP4Q5JVS0 413 aaKnown RBP5.68□□□□□ -1.5
VPS13A-213ENST00000539950 TRMT10BQ6PF06 316 aaKnown RBP5.68□□□□□ -1.5
VPS13A-213ENST00000539950 SPATC1Q76KD6 591 aa5.68□□□□□ -1.5
VPS13A-213ENST00000539950 IFNL3Q8IZI9 196 aa5.68□□□□□ -1.5
VPS13A-213ENST00000539950 LRRC47Q8N1G4 583 aaKnown RBP5.68□□□□□ -1.5
VPS13A-213ENST00000539950 UHMK1Q8TAS1 419 aaKnown RBP5.68□□□□□ -1.5
VPS13A-213ENST00000539950 SAMD11Q96NU1 681 aa5.68□□□□□ -1.5
VPS13A-213ENST00000539950 GPR20Q99678 358 aa5.68□□□□□ -1.5
VPS13A-213ENST00000539950 ZFYVE21Q9BQ24 234 aa5.68□□□□□ -1.5
VPS13A-213ENST00000539950 CYP7B1O75881 506 aa5.67□□□□□ -1.5
VPS13A-213ENST00000539950 SOD2P04179 222 aa5.67□□□□□ -1.5
VPS13A-213ENST00000539950 SPIRE1Q08AE8 756 aa5.67□□□□□ -1.5
VPS13A-213ENST00000539950 IFRD2Q12894 506 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-213ENST00000539950 PUM1Q14671 1186 aaKnown RBP eCLIP5.67□□□□□ -1.5
VPS13A-213ENST00000539950 VASNQ6EMK4 673 aa5.67□□□□□ -1.5
VPS13A-213ENST00000539950 PKN3Q6P5Z2 889 aa5.67□□□□□ -1.5
VPS13A-213ENST00000539950 DTX3Q8N9I9 347 aa5.67□□□□□ -1.5
VPS13A-213ENST00000539950 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.67□□□□□ -1.5
VPS13A-213ENST00000539950 WRNIP1Q96S55 665 aa5.67□□□□□ -1.5
VPS13A-213ENST00000539950 PPP4R1LQ9P1A2 415 aa5.67□□□□□ -1.5
VPS13A-213ENST00000539950 MSRB2Q9Y3D2 182 aa5.67□□□□□ -1.5
VPS13A-213ENST00000539950 TRAF6Q9Y4K3 522 aa5.67□□□□□ -1.5
VPS13A-213ENST00000539950 LAMTOR5O43504 91 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 ADCY3O60266 1144 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 STK10O94804 968 aaKnown RBP5.66□□□□□ -1.5
VPS13A-213ENST00000539950 CKMP06732 381 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 FAHP16930 419 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 PAN2Q504Q3 1202 aaKnown RBP5.66□□□□□ -1.5
VPS13A-213ENST00000539950 GLB1LQ6UWU2 654 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-213ENST00000539950 KBTBD2Q8IY47 623 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 NUDT10Q8NFP7 164 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 IGDCC4Q8TDY8 1250 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 ZNF669Q96BR6 464 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-213ENST00000539950 NUDT11Q96G61 164 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 SPATA9Q9BWV2 254 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 IPPKQ9H8X2 491 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 DLL4Q9NR61 685 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 FTSJ1Q9UET6 329 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 ST6GALNAC2Q9UJ37 374 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 DSEQ9UL01 958 aa5.66□□□□□ -1.5
VPS13A-213ENST00000539950 KLHL18O94889 574 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 ZNF20P17024 532 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 EPHA5P54756 1037 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 ZC3H6P61129 1189 aaKnown RBP5.65□□□□□ -1.5
VPS13A-213ENST00000539950 NAALADL2Q58DX5 795 aa5.65□□□□□ -1.5
VPS13A-213ENST00000539950 CD276Q5ZPR3 534 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms